poseidon-framework/poseidon-hs

Issues

• beef-up trident serve to provide meaningful "URI"-like responses for Poseidon_IDs and packages

  #323 opened 7 days ago by stschiff
  1

• trident init issue

  #321 opened 11 days ago by guevara2024
  1

• `-p` should allow to select VCF files (both normal and zipped)

  #317 opened a month ago by nevrome
  2

• Bad handling of file extensions with unpackaged genotype data in trident v1.5.7.0

  #314 opened a month ago by smpeltola
  2

• .janno validation fails for cells with text that ends with an `à` character

  #312 opened a month ago by nevrome
  2

• trident validate should check LF-line endings

  #311 opened a month ago by stschiff
  2

• List of code sections that should be refactored at some point

  #236 opened 2 years ago by nevrome
  3

• Improve the error messages in case of .janno parsing failure

  #306 opened a month ago by nevrome
  5

• Problem installing trident with conda (MacOS)

  #279 opened 5 months ago by jbv2
  11

• Shorten excessively long genotype data parsing warnings just as we do with errors

  #244 opened 5 months ago by nevrome
  2

• Release action should build a static binary for Apple Silicon

  #247 opened 5 months ago by nevrome
  4

• An API feature to get the complete .Janno table

  #273 opened 5 months ago by 93Boy
  4

• Arranging individuals in a poseidon package

  #300 opened 5 months ago by TCLamnidis
  11

• Add support for PACKEDANCESTRYMAP format

  #303 opened 5 months ago by TCLamnidis
  2

• MD5 hash for .janno file different on macOS Ventura 13.6.7 (22G720)

  #302 opened 5 months ago by nevrome
  5

• trident rectify could have an option to check and fill the `Nr_SNPs` Janno-column

  #298 opened 6 months ago by stschiff
  0

• trident v1.4.1.0 segmentation fault on mac OS

  #296 opened 7 months ago by joshuamschmidt
  9

• Option to remove contributors from a package with `trident rectify`, or automatic overwriting of Josiah Carberry when new contributors are added.

  #289 opened 7 months ago by TCLamnidis
  8

• Use stack for release action

  #291 opened 7 months ago by nevrome
  2

• trident genoconvert throws warning that files it created exist

  #290 opened 8 months ago by TCLamnidis
  7

• gh action: Haskell/actions/setup is getting deprecated

  #292 opened 9 months ago by stschiff
  2

• Getting more information out of trident list

  #285 opened a year ago by TCLamnidis
  3

• Breaking changes and maintaining reproducibility

  #276 opened a year ago by nevrome
  4

• Split up SecondaryTypes

  #252 opened a year ago by stschiff
  2

• new feature janna-coalesce or janno-join

  #278 opened a year ago by stschiff
  5

• Beef up Server-API to facilitate more complex front-end queries

  #272 opened a year ago by stschiff
  1

• Issues in HTTP-communication with server

  #277 opened a year ago by raveancic
  4

• The forge and fetch selection language should be able to specify package versions

  #260 opened a year ago by nevrome
  1

• Making Inclusion/Exclusion Semantics of Forgescript more consistent

  #269 opened a year ago by stschiff
  2

• Implement a way to specify the output order of individuals in `forge`

  #230 opened 2 years ago by nevrome
  4

• janno contamination consistency ignores NA

  #270 opened a year ago by stschiff
  2

• Add a global option `--ignoreChecksums` to trident

  #250 opened a year ago by nevrome
  3

• Make `update` more modular

  #249 opened a year ago by nevrome
  3

• Add meaningful metavars to all optparse-applicative parsers

  #256 opened a year ago by nevrome
  2

• CI will fail at the end of this month

  #246 opened a year ago by nevrome
  2

• Introducing reproducibility

  #218 opened a year ago by stschiff
  7

• Validate only components of a package with `validate`

  #248 opened a year ago by nevrome
  3

• Notes on how to serve multiple package respositories

  #254 opened a year ago by stschiff
  6

• Add subcommand `snapshot`

  #257 opened a year ago by nevrome
  0

• Entity names should not be allowed to include () bracket openings and closings

  #243 opened 2 years ago by stschiff
  2

• `forge` should get an option to append an optional .janno column with source-package information

  #251 opened 2 years ago by nevrome
  7

• `poseidon-http-server` should be generated in automatic release pipeline

  #219 opened a year ago by stschiff
  3

• Allow reading genotype data in compressed archives

  #237 opened 2 years ago by nevrome
  1

• Improve the error messages in case of a genotype data parsing failure

  #224 opened 2 years ago by nevrome
  4

• Make `[JannoRow]` an instance of `Monoid`

  #229 opened 2 years ago by nevrome
  0

• `validate` should have an option to parse the entire .bed/.geno file, not just the first 100 SNPs

  #223 opened 2 years ago by nevrome
  0

• Add recommendation to general error message

  #227 opened 2 years ago by nevrome
  3

• `-j` in `list` should support arbitrary, additional columns

  #225 opened 2 years ago by nevrome
  0

• Encoding issue when writing .janno files

  #213 opened 2 years ago by nevrome
  1

• Fog

  #217 opened 2 years ago by stschiff
  0