Issues
- 2
how to get GSE information for a SRR run id?
#136 opened by lizhebio - 11
fetch_all does not work
#130 opened by kapedalex - 0
use VersionInHelp parser
#135 opened by nsheff - 9
Downloading metadata for all GSE
#129 opened by srp33 - 0
Update docs
#134 opened by khoroshevskyi - 0
Update installation of prefetch in docs
#131 opened by khoroshevskyi - 0
- 1
geofetch is changing sample_names where `+` and `-` are and changing it to underscore
#127 opened by khoroshevskyi - 0
Are Greek letters causing errors ?
#128 opened by khoroshevskyi - 0
PEP description is None
#124 opened by khoroshevskyi - 2
Download metadata from SRA
#123 opened by amnahsiddiqa - 2
- 0
Geofetch should preserve order
#119 opened by khoroshevskyi - 4
Make geofetch more efficient
#121 opened by khoroshevskyi - 3
Can't download SRRs larger than 50GB
#113 opened by drejom - 0
Remove test dependencies from actual GEO files
#116 opened by khoroshevskyi - 3
Report error in downloading SRA data
#112 opened by GuohuaZhu - 0
Update pandas version
#108 opened by khoroshevskyi - 0
- 5
Disable downloading huge soft files
#102 opened by khoroshevskyi - 0
geofetch creates unwanted empty folders
#104 opened by khoroshevskyi - 0
Dealing with GEO tables
#103 opened by khoroshevskyi - 0
`sample_name`s for processed files can be same what leads to downstream problems
#105 opened by khoroshevskyi - 0
Created PEPs don't contain some of the information
#106 opened by khoroshevskyi - 0
Bugs and redundancy in requirements
#97 opened by khoroshevskyi - 1
Error in expanding metadata list
#99 opened by khoroshevskyi - 1
geofetch produces incorrect link to sra file
#100 opened by khoroshevskyi - 1
Error while downloading project
#98 opened by khoroshevskyi - 0
- 0
Create peppy object by using geofetch
#81 opened by khoroshevskyi - 0
raw projects don't have subfolders
#83 opened by khoroshevskyi - 0
Add more tests
#86 opened by khoroshevskyi - 2
subsample null
#91 opened by nsheff - 1
- 0
Add example to the cli
#89 opened by khoroshevskyi - 1
Error in producing config file for raw data
#90 opened by khoroshevskyi - 5
colons in values
#92 opened by nsheff - 0
- 2
Add progress bar
#73 opened by khoroshevskyi - 4
- 1
- 1
Delete old geofetch website
#85 opened by khoroshevskyi - 0
The usage of the eutils must be improved
#77 opened by khoroshevskyi - 2
Fail to download GSExxxxxx_SRA.csv
#74 opened by shkao - 2
make columns case insensitive
#68 opened by khoroshevskyi - 3
Sanitize sample names
#71 opened by nleroy917 - 1
Ability create `.pep.yaml` files
#70 opened by nleroy917 - 2
- 0
Error while using --filter-size
#67 opened by khoroshevskyi - 0
Disable creating huge combined pep
#66 opened by nsheff