Pinned Repositories
alphafold_finetune
Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
conga
Clonotype Neighbor Graph Analysis
knotted_designs
Supporting materials for manuscript on design of knotted proteins
protein-frame-flow
Fast protein backbone generation with SE(3) flow matching.
pubtcrs
This repository contains C++ source code for TCR clustering and correlation analysis
repdist
Software for comparing T cell receptor (TCR) repertoires
SpecDesignProteinMPNN
Version of ProteinMPNN for specificity design
tcr-dist
Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences
TCRdock
python tools for TCR:peptide-MHC modeling and analysis
phbradley's Repositories
phbradley/alphafold_finetune
Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
phbradley/conga
Clonotype Neighbor Graph Analysis
phbradley/tcr-dist
Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
phbradley/TCRdock
python tools for TCR:peptide-MHC modeling and analysis
phbradley/knotted_designs
Supporting materials for manuscript on design of knotted proteins
phbradley/pubtcrs
This repository contains C++ source code for TCR clustering and correlation analysis
phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences
phbradley/SpecDesignProteinMPNN
Version of ProteinMPNN for specificity design
phbradley/protein-frame-flow
Fast protein backbone generation with SE(3) flow matching.
phbradley/repdist
Software for comparing T cell receptor (TCR) repertoires