Issues
- 3
Question re: GEX cluster assignments
#70 opened by yls2g13 - 1
Where is the ‘Notes’ in ipynb?
#71 opened by winglet0996 - 0
using CONGA on multiplexed data?
#69 opened by jjs847 - 0
- 1
Only CDR3 Region?
#67 opened by TheRaspberryFox - 0
- 5
Mouse BCR
#58 opened by DennisCambridge - 10
What does spurious chain sharing mean?
#56 opened by chuckzzzz - 5
Question about --nbr_fracs
#64 opened by anchormok - 1
Issue with logo plots
#62 opened by guillemsanchezsanchez1996 - 1
running Conga on integrated Seurat Gex
#61 opened by SamWell16 - 5
Just make Logo plots starting from TCR data
#54 opened by erosix - 1
pMHC data processing
#60 opened by leeanapeters - 2
update mouse tcr gene reference
#45 opened by sschattgen - 1
ImportError: cannot import name 'PathLike'
#53 opened by zhao-xinlu - 1
what is mean of num_cells_w_tcr: 19055
#55 opened by mabaoweireadingene - 2
- 0
run_conga.py error = UnicodeEncodeError: 'ascii' codec can't encode character '\xd7' in position 26: ordinal not in range(128)
#51 opened by shimbrianh - 0
- 1
- 1
Plot epitope specificity on GEX umap
#48 opened by cr2106 - 9
Empty clones_file
#47 opened by kkearns13 - 7
Question about using previously integrated gex data
#28 opened by s2hui - 3
Merging Multiple TCR Files
#46 opened by kkearns13 - 2
Where iMHC scores are stored in the data model?
#44 opened by markgene - 1
Writing out all_nbrs dictionary for reruns.
#38 opened by sschattgen - 5
Question: num cells
#30 opened by s2hui - 5
Error writing adata to file
#43 opened by kjkrishnan - 1
Save plots as svg
#36 opened by cr2106 - 11
weird GEX and TCR UMAPs
#31 opened by coro1c - 4
- 1
Merging with Batch Keys
#42 opened by SandwichFiend - 6
merge_samples errors
#40 opened by AlicePsyche - 2
- 0
- 6
TCR/BCR logos misaligned
#35 opened by JingwenD - 7
Compare multiple sample groups
#34 opened by cr2106 - 1
- 1
- 7
failed in merge_samples.py
#33 opened by JingwenD - 15
assert exists(clones_file)
#20 opened by afcmalone - 7
KeyError: 'graph_vs_graph_logos'
#23 opened by chris-rands - 1
- 2
Just iMHC Scoring Method
#27 opened by kanefos - 4
Question: barcodes for cells
#26 opened by s2hui - 3
- 2
- 3
Can CoNGA handle multiple samples?
#22 opened by lormmy - 0
TO DO: updates after the big refactor
#18 opened by phbradley - 9
Question: Can Conga be run on SMART-seq data ?
#17 opened by vincenthahaut