Pinned Repositories
higlass
Fast, flexible and extensible genome browser.
bwa-pssm
A burrows-wheeler transform-based probabilistic short read mapper.
d3-contouring-example
An example of using different contouring libraries with d3.js.
gene-citation-counts
negspy
Python NGS Repository
roadway_routing
forgi
An RNA manipulation library.
forna
Create force-directed graphs of RNA secondary structures.
pkerpedjiev's Repositories
pkerpedjiev/gene-citation-counts
pkerpedjiev/negspy
Python NGS Repository
pkerpedjiev/emptypipes
Blog / Website
pkerpedjiev/bam-to-multivec
pkerpedjiev/locup
pkerpedjiev/nometoexecutor
pkerpedjiev/nometonome
pkerpedjiev/anvil-higlass-jupyter
pkerpedjiev/bam-js
Parse BAM and BAM index files in javascript for node and the browser
pkerpedjiev/bigtools
pkerpedjiev/biopython
Official git repository for Biopython (converted from CVS)
pkerpedjiev/colored_glass
colored dot plots to use with higlass
pkerpedjiev/cooler
A cool place to store your Hi-C
pkerpedjiev/cooltools
The tools for your .cool's
pkerpedjiev/executor
pkerpedjiev/hic2cool
Lightweight converter between hic and cool contact matrices.
pkerpedjiev/higlass-dynseq
Dynamic sequence track for HiGlass
pkerpedjiev/higlass-private
pkerpedjiev/Liftoff
An accurate GFF3/GTF lift over pipeline
pkerpedjiev/oakland-trees
pkerpedjiev/osm2pgsql
OpenStreetMap data to PostgreSQL converter
pkerpedjiev/oxbow
Read specialized NGS formats as data frames in R, Python, and more.
pkerpedjiev/peax
Peax is a tool for interactive visual pattern search and exploration in epigenomic data based on unsupervised representation learning with autoencoders
pkerpedjiev/peteblast-server
pkerpedjiev/react-heatmap-grid
A react component for heatmap visualisation in grid layout
pkerpedjiev/s3sqlite
Query SQLite files in S3 using s3fs
pkerpedjiev/smart_open_chunked
Utils for streaming large files (S3, HDFS, gzip, bz2...)
pkerpedjiev/t2t-lifover
pkerpedjiev/tf
pkerpedjiev/threads.js
š§µ Make web workers & worker threads as simple as a function call.