rabix/benten

auto-completion of edam file types

Opened this issue · 4 comments

Deleted user commented

in the file type field auto complete edam file types

vemonet commented

Really interested by this feature!

I don't know how hard it would be to implement, but it could be particularly interesting to make it generic so that you can perform autocompletion for any ontologies anywhere in a CWL file

For example I am using EDAM to also describe a tools functions and topics:
https://github.com/MaastrichtU-IDS/d2s-cwl-workflows/blob/master/steps/run-r2rml.cwl#L62:L75

The most semantic way would be to resolve a property depending on its range in the ontology describing it, but it might be complex to properly implement so that it works for any ontology and using reasoning

  • 👍1
matuskalas commented

Folks, any interest to pursue this?

FYI, @davelopez & @beatrizserrano are thinking about adding EDAM and/or Bio.tools suggestions to the language model for Galaxy tool wrappers