raufs

raufs's Stars

• Textualize/rich

  Rich is a Python library for rich text and beautiful formatting in the terminal.

  Language:Python50.1k5381.4k1.8k

• nschloe/termplotlib

  :chart_with_upwards_trend: Plotting on the command line

  Language:Python681113419

• jenniferlu717/Bracken

  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

  Language:C++2971326750

• lmdu/pyfastx

  a python package for fast random access to sequences from plain and gzipped FASTA/Q files

  Language:C27077123

• CAMI-challenge/CAMISIM

  CAMISIM: Simulating metagenomes and microbial communities

  Language:Python1852318837

• steineggerlab/foldmason

  Multiple Protein Structure Alignment at Scale with FoldMason

  Language:C14451214

• abacus-gene/paml

  PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **technical issues** on this repository (e.g., compiling, programs abort, etc.). Problems with input data (e.g., error/warning messages) & general questions should be posted at https://groups.google.com/g/pamlsoftware?pli

  Language:C12995322

• shenwei356/LexicMap

  LexicMap: efficient sequence alignment against millions of prokaryotic genomes

  Language:Go120364

• bhattlab/MGEfinder

  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.

  Language:Python11435116

• lh3/ropebwt3

  BWT construction and search

  Language:C104643

• husonlab/splitstree6

  SplitsTree App

  Language:Java1029397

• emmanuelparadis/ape

  Analysis of Phylogenetics and Evolution

  Language:R5777311

• tatumdmortimer/popgen-stats

  Scripts to calculate population genetics statistics

  Language:Python5571319

• marbl/harvest

  52155211

• kussell-lab/mcorr

  Inferring bacterial recombination rates from large-scale sequencing datasets.

  Language:Go424228

• vlasmirnov/MAGUS

  Graph Clustering Merger

  Language:Python3331213

• emmanuelparadis/pegas

  Population and Evolutionary Genetics Analysis System

  Language:R2968110

• Ebedthan/xgt

  Efficient and fast querying and parsing of GTDB's data

  Language:Rust28110

• dr-joe-wirth/primerForge

  software to identify primers that can distinguish genomes

  Language:Python202334

• Kalan-Lab/lsaBGC-Pan

  lsaBGC - suite for pan-BGC-omics analysis

  Language:Python18292

• Maggi-Chen/FusionSeeker

  A gene fusion caller for long-read transcriptome sequencing data.

  Language:Python17174

• Tropini-lab/PUPpy

  Pipeline to design taxon-specific primes in defined bacterial communities.

  Language:Python142124

• BTheDragonMaster/RAIChU

  Reaction Analysis through Imaging of Chemical Units

  Language:Python121204

• Ebedthan/hkgfinder

  Find housekeeping genes in prokaryotic (meta)genomic data

  Language:Python11100

• jolespin/pykofamsearch

  Fast implementation of KofamScan optimized for high-memory systems using PyHmmer

  Language:Python11121

• Gibbons-Lab/pipelines

  Pipelines used in the lab.

  Language:Nextflow10203

• SizheQiu/Seq2Topt

  A predictor of enzyme optimal temperature

  Language:Jupyter Notebook8132

• apcamargo/cluster_msa

  Language:Python410

• broadinstitute/GAEMR

  Genome Assembly Evaluation, Metrics and Reporting

  Language:Python3653

• Kalan-Lab/Bioassay-ML-Image-Classification

  This repository contains a script for training a machine learning model to classify images into categories. The model is trained on custom images provided by the user.

  Language:Jupyter Notebook1200