How to find out the k-mers summary of protein fasta
wevxman opened this issue · 3 comments
wevxman commented
Hello! Mercat2 is a useful software to find out k-mers and I'm thankful for its help. I have a question that how to find out the k-mers summary of protein fasta after running Mercat2 using faa file. I just found a tsv file with a column title named 'count' and I couldn't understand the meaning of it. Hope your answer!
raw-lab commented
The count file provides you a list of kmers from the protein fasta with counts.
raw937 commented
Should look something like this:
MTLL 101
MLLT 10
If it was a 4-mer you picked. Let us know?
raw-lab commented
Thank you for using MerCat2. We have a new update you should try. Let us know if any further issue arises? For now we are going to close this issue.
many thanks,
RAW Lab