rec3141

rec3141's Stars

• google/jax

  Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

  Language:Python30k3285.5k2.7k

• latitudegames/AIDungeon

  Infinite adventures await!

  Language:Python3.2k83137553

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k261k352

• gamcil/clinker

  Gene cluster comparison figure generator

  Language:Python530149172

• fbreitwieser/krakenuniq

  🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

  Language:C++2241616743

• sebtheiler/tutorials

  All of the code for my Medium articles

  Language:Jupyter Notebook13488107

• cozygene/FEAST

  Fast expectation maximization for microbial source tracking

  Language:R118166260

• mpdunne/alan

  Alignment viewer for linux terminal

  Language:Shell115547

• ratschlab/metagraph

  Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

  Language:C++112167617

• ColinEberhardt/d3fc-webgl-hathi-explorer

  A T-SNE scatter plot implemented using D3FC's WebGL series

  Language:JavaScript953523

• jolespin/veba

  A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes

  Language:Python774449

• bjtully/BioData

  All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")

  Language:Python7033039

• hzi-bifo/traitar

  From genomes to phenotypes: Traitar, the microbial trait analyzer

  Language:Python5611015

• EngqvistLab/Tome

  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima

  Language:Python523615

• GCRC/nunaliit

  Nunaliit Atlas Framework

  Language:JavaScript461289715

• tlemane/kmindex

  Index kmtricks bf matrices

  Language:C++42313

• WGLab/NanoMod

  NanoMod: a computational tool to detect DNA modifications using Nanopore long-read sequencing data

  Language:Python3613298

• arslanastral/jambox

  A collaborative real-time P2P virtual music instrument.

  Language:Svelte32100

• bacteria-archaea-traits/bacteria-archaea-traits

  A synthesis of bacterial and archaeal phenotypic trait data

  Language:R306411

• suttacentral/bilara-data

  Content for Bilara translation webapp.

  Language:HTML281312437

• mibwurrepo/Microbial-bioinformatics-introductory-course-Material-2018

  Course material for OPEN & REPRODUCIBLE MICROBIOME DATA ANALYSIS SPRING SCHOOL

  Language:R278720

• jsilve24/stray

  Stray has been renamed fido, development continues at jsilve24/fido

  Language:R233355

• plthompson/mcomsimr

  Simulate metacommunity dynamics in R

  Language:R15312

• EnvGen/toolbox

  Various scripts used at the EnvGen group, directed towards metagenomic analysis.

  Language:Python14912

• cresswellkg/FastPCA

  FastPCA using PRIMME

  Language:R8001

• USGS-R/CyAN

  Language:R6844

• dvera/gyro

  R wrapper scripts for genomic tools

  Language:R5301

• jslefche/multSE

  Multivariate dissimilarity-based standard error

  Language:R3322

• rohansachdeva/assembly_repeats

  Language:Python3111

• yxxue/Recovery-and-refinement-of-MAGs-for-permafrost-metagenome

  A workflow for high-quality MAG recovery and refinement in permafrost metagenome

  Language:Python3200