cozygene/FEAST

Issues

• Shared Taxa?

  #65 opened 4 months ago by biocsmith
  0

• 'list' object cannot be coerced to type 'integer'

  #48 opened 2 years ago by melissaszy
  6

• Using FEAST for metagenomic data

  #64 opened 5 months ago by AUAShen
  0

• Which the results in FEAST_output$data_prop can be used？

  #29 opened 3 years ago by WeichuanLin6688
  3

• Error in mixing_proportions[which(rownames(mixing_proportions) %in% SinkNames), : incorrect number of dimensions

  #50 opened 2 years ago by melissaszy
  12

• issue with FEAST matrix

  #63 opened 6 months ago by lorenzovergani89
  0

• demo data error: Error in rowSums(C[c(train.ix, test.ix), ]) 'x' must be an array of at least two dimensions

  #61 opened 7 months ago by lorenzovergani89
  3

• Error in if (!is.element(class(x), c("matrix", "data.frame", "array"))) x <- matrix(x, : the condition has length > 1

  #37 opened 3 years ago by b-robinson
  3

• Error in if (sum(x[i, ]) > maxdepth) { : missing value where TRUE/FALSE needed using Nonunique_Sources branch

  #18 opened 3 years ago by sixvable
  13

• q2-FEAST plugin

  #62 opened 6 months ago by khemlalnirmalkar
  0

• Error in if (abs(m_guesses[length(m_guesses)] - m_guesses[length(m_guesses) - :missing value where TRUE/FALSE needed

  #58 opened a year ago by KyleRowe1230
  3

• Error in M_fn(alphas = curalphas, sources = sources, sink = sink, observed = observed, : unused argument (options = options)

  #47 opened 2 years ago by YyLu5
  1

• Error in R

  #24 opened 4 years ago by sbornbusch
  5

• Reliability with Single Source and Sink Samples

  #60 opened a year ago by jianglory
  0

• Installation issue

  #59 opened a year ago by nikolgr
  3

• How to use existing data as source?

  #56 opened a year ago by AkilaMuthalagu
  2

• Remove setwd() from image output

  #57 opened a year ago by abossers-uu
  0

• could not find function "Load_metadata"

  #53 opened a year ago by kelly-xia
  1

• Error in FEAST(source = sources, sinks = t(sinks), env = envs[train.ix], :

  #40 opened 2 years ago by 704913307
  1

• 'x' must be an array of at least two dimensions

  #49 opened a year ago by AkilaMuthalagu
  2

• "Load_metadata" function

  #55 opened a year ago
  0

• Package ‘FEAST’ not available for the latest version of R(4.3.1)

  #54 opened a year ago
  0

• Cannot understand the parameter named "Coverage"

  #52 opened a year ago by diego00012138
  0

• Error in if (sum(x[i, ]) > maxdepth) { : missing value where TRUE/FALSE needed

  #51 opened 2 years ago by rubmc97
  2

• Error in sprintf("Error: there are %d sample ids in common ") : too few arguments

  #27 opened 3 years ago by develynw
  8

• Error in totalsource_2[(j + 1), ] <- t(unknown_source_rarefy)

  #46 opened 2 years ago by awsdd
  5

• Reproducibility of demo data

  #42 opened 2 years ago by CamilaDuitama
  2

• incorrect number of dimensions

  #44 opened 2 years ago by FlorenciaTL
  2

• Could not find function "Infer.SourceContribution"

  #45 opened 2 years ago by kbazany
  6

• Error in PlotSourceContribution

  #43 opened 2 years ago by gauguinP
  2

• error "There is no "FEAST" function'

  #41 opened 2 years ago by 704913307
  1

• Data result analysis(the comprehensive contribution ratio of a certain environment(soil))

  #39 opened 2 years ago by CXang
  0

• There were 50 or more warnings (use warnings() to see the first 50) run with FEAST

  #35 opened 3 years ago by timeresistance1996
  2

• How to calculate the count value of metaOTU？

  #38 opened 3 years ago by timeresistance1996
  1

• I want to try to run FEAST, but our data is metagenomic and not 16s, how can I get something like OTU tables? Thanks.

  #36 opened 3 years ago by yangjintao0626
  0

• Error in rowSums(C[c(train.ix, test.ix), ]) with FEAST

  #34 opened 3 years ago by timeresistance1996
  0

• Error in rowSums(C[c(train.ix, test.ix), ])

  #33 opened 3 years ago by timeresistance1996
  0

• Erreur dans if (sum(x[i, ]) > maxdepth) { : valeur manquante là où TRUE / FALSE est requis

  #28 opened 3 years ago by zina-R
  2

• otu table error?

  #31 opened 3 years ago by kruehling
  2

• Is FEAST parallelized?

  #32 opened 3 years ago by liaochen1988
  1

• Problem installing FEAST in R

  #30 opened 3 years ago by wangjianing0618
  1

• I calculate the source of each sample using the samples group completely same with them, which obtained strange numbers

  #26 opened 4 years ago by kingtom2016
  0

• error when trying to install devtools::install_github("cozygene/FEAST")

  #21 opened 4 years ago by NeginValizadegan
  0

• What is the id column?

  #23 opened 4 years ago by NeginValizadegan
  1

• Count table orientation

  #25 opened 4 years ago by cyklee
  1

• Problem installing FEAST in R

  #22 opened 4 years ago by NeginValizadegan
  2

• Calls: as.matrix -> rarefy

  #20 opened 4 years ago by XiongGZ
  1

• Can not replicate result

  #19 opened 4 years ago by yjiakang
  5

• HOW to get each source tax adu ?

  #17 opened 4 years ago by alienn233
  0

• Progress bar for FEAST function

  #16 opened 4 years ago by AdeBC
  0