ruih-ruih

ruih-ruih's Stars

• fastapi/fastapi

  FastAPI framework, high performance, easy to learn, fast to code, ready for production

  Language:Python78.3k6773.5k6.7k

• marktext/marktext

  📝A simple and elegant markdown editor, available for Linux, macOS and Windows.

  Language:JavaScript47.8k4242.8k3.5k

• kaixindelele/ChatPaper

  Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结+专业翻译+润色+审稿+审稿回复

  Language:Python18.5k942181.9k

• Visualize-ML/Book4_Power-of-Matrix

  Book_4_《矩阵力量》 | 鸢尾花书：从加减乘除到机器学习；上架！

  Language:Python8.9k761621.3k

• joshpxyne/gpt-migrate

  Easily migrate your codebase from one framework or language to another.

  Language:Python6.9k5641485

• Visualize-ML/Book3_Elements-of-Mathematics

  Book_3_《数学要素》 | 鸢尾花书：从加减乘除到机器学习；上架；欢迎继续纠错，纠错多的同学还会有赠书！

  Language:Python6.5k771651.1k

• fomantic/Fomantic-UI

  Fomantic-UI is the official community fork of Semantic-UI

  Language:JavaScript3.6k551.1k333

• jokergoo/ComplexHeatmap

  Make Complex Heatmaps

  Language:R1.3k351.2k228

• trevismd/statannotations

  add statistical significance annotations on seaborn plots. Further development of statannot, with bugfixes, new features, and a different API.

  Language:Python67668174

• bendichter/brokenaxes

  Create matplotlib plots with broken axes

  Language:Python52678647

• Starlitnightly/omicverse

  A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

  Language:Jupyter Notebook481617158

• DingWB/PyComplexHeatmap

  PyComplexHeatmap: A Python package to plot complex heatmap (clustermap)

  Language:Python29767032

• CompEpigen/figeno

  Tool for plotting sequencing data along genomic coordinates.

  Language:Python2546228

• mhammell-laboratory/TEtranscripts

  A package for including transposable elements in differential enrichment analysis of sequencing datasets.

  Language:Python2291920830

• GMOD/jbrowse-components

  Source code for JBrowse 2, a modern React-based genome browser

  Language:TypeScript211212k63

• royfrancis/pophelper

  An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.

  Language:R143139038

• SabrinaSun1225/ChromaPalette

  Language:Python137119

• qjiangzhao/TEtrimmer

  TEtrimmer: a novel tool to automate manual curation of transposable elements

  Language:Python665172

• mlbendall/telescope

  Quantification of transposable element expression using RNA-seq

  Language:Python6475117

• wyang17/SQuIRE

  Software for Quantifying Interspersed Repeat Expression

  Language:Python4988730

• nickFurlotte/pylmm

  A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.

  Language:Python4313121

• jkimlab/PAPipe

  29261

• trevismd/statannotations-tutorials

  In this tutorial, we go over the features of statannotations

  Language:Jupyter Notebook231011

• simon19891216/GFAP

  a software for annotating plant genes

  Language:TypeScript19344

• yuhuihui2011/MEPmodeler

  Predict MicroExons in Plant Genomes

  Language:R7202

• ZhouQiangwei/dmtools

  BS-seq, WGBS, NOMe-Seq, RRBS data storage and analysis tool

  Language:C60

• yllu/WGBS_SlSC

  Codes for data processing of WGBS in tomato sperm cell lineage development

  Language:R4202

• Xiaohe-Lin/Heritable_variation

  GitHub Desktop tutorial repository

  Language:R210

• ZhouQiangwei/pydmtools

  python wrapper of dmtools

  Language:C2100

• ETEdiscovery2022/ETE_discovery

  Pipeline for the investigation of TE exaptation events in a plants with large genomes

  110