sa-lee/starmie

Issues

• Cannot load structure output

  #46 opened 5 years ago by jdmontenegro
  0

• loadStructure introducing NAs

  #45 opened 5 years ago by dionnecargy
  0

• Loading multiple files at once

  #43 opened 7 years ago by markusruhsam
  2

• averagePairWiseSimilarityH

  #44 opened 5 years ago by csmiguel
  0

• Other visualisation methods

  #6 opened 9 years ago by sa-lee
  2

• local shiny interface

  #22 opened 9 years ago by sa-lee
  4

• populations parameter should be a character vector

  #42 opened 8 years ago by gtonkinhill
  0

• bug: subsetting an admixList/structList/fastList to a single object returns a list

  #41 opened 8 years ago by sa-lee
  0

• test loadStructure output on other STRUCTURE models

  #28 opened 8 years ago by sa-lee
  2

• Clumpp needs to handle k=1 gracefully

  #38 opened 8 years ago by gtonkinhill
  1

• loadAdmixture fails on the log files if cv hasnt been run.

  #37 opened 8 years ago by gtonkinhill
  1

• Add in bootstrapping support for admixture

  #36 opened 8 years ago by gtonkinhill
  1

• functions that make use of function from another library only once should be in suggests

  #31 opened 8 years ago by sa-lee
  0

• plot methods should return ggplot object

  #33 opened 8 years ago by sa-lee
  0

• Vignette preparation

  #12 opened 8 years ago by sa-lee
  2

• cody tidy up before release

  #30 opened 8 years ago by sa-lee
  0

• simulate Q matrix with repeated runs from dirichlet distribution

  #21 opened 9 years ago by sa-lee
  2

• Bug: loadStructure deletes sample/pop labels if they are non-numeric

  #13 opened 8 years ago by sa-lee
  0

• correlation metric for label switching problem

  #27 opened 8 years ago by sa-lee
  0

• inputs to functions should take struct, admix or Q matrix (either as lists or individually)

  #29 opened 8 years ago by sa-lee
  2

• reduce package size

  #24 opened 8 years ago by sa-lee
  2

• starmieList object?

  #20 opened 8 years ago by sa-lee
  3

• clumpak

  #17 opened 8 years ago by sa-lee
  1

• fixed k-means for looking at best permutation

  #15 opened 8 years ago by sa-lee
  5

• label switching package

  #18 opened 8 years ago by gtonkinhill
  0

• add phlyogentic trees to bar plots

  #26 opened 8 years ago by sa-lee
  0

• clean up bestK function

  #25 opened 8 years ago by sa-lee
  0

• cleaner example datasets

  #19 opened 8 years ago by sa-lee
  0

• print method for struct object

  #23 opened 8 years ago by sa-lee
  0

• simulate from STRUCTURE model

  #5 opened 9 years ago by sa-lee
  0

• Generate STRUCTURE minimal files

  #16 opened 9 years ago by sa-lee
  0

• Load Structure Data

  #2 opened 9 years ago by gtonkinhill
  4

• Estimate the best K

  #4 opened 9 years ago by gtonkinhill
  6

• Enhancement: fun coding exercise rewrite STRUCTURE in C++/R

  #9 opened 9 years ago by sa-lee
  0

• Generate barplot

  #3 opened 9 years ago by gtonkinhill
  2

• diagnostic plots

  #8 opened 9 years ago by sa-lee
  0

• test datasets

  #7 opened 9 years ago by sa-lee
  3

• Accessor methods for starmie objects

  #11 opened 9 years ago by sa-lee
  1

• Bug: clummp greedyLargeK broken

  #14 opened 9 years ago by sa-lee
  1

• Load Admixture Data

  #1 opened 9 years ago by gtonkinhill
  15

• Convert Admixture inputs to Structure and vice versa

  #10 opened 9 years ago by gtonkinhill
  0