sacdallago
PhD student in Bioinformatics@TUM, made of chaos and on his way back to it. (🏝 until mid nov)
@NVIDIAMunich
Pinned Repositories
folding_tools
A collection of *fold* tools
EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
factoid
A project to capture biological pathway data from academic papers
Aquaria
Simplifying the generation of insight from protein structures
bio_embeddings
Get protein embeddings from protein sequences
biotrainer
deeploc_redo
embed.predictprotein.org
git-inspector
Automatize reporting for multiple repositories using https://github.com/ejwa/gitinspector
sacdallago's Repositories
sacdallago/bio_embeddings
Get protein embeddings from protein sequences
sacdallago/biotrainer
sacdallago/embed.predictprotein.org
sacdallago/deeploc_redo
sacdallago/git-inspector
Automatize reporting for multiple repositories using https://github.com/ejwa/gitinspector
sacdallago/cellmap
Protein localization and protein-protein interaction visualization tool developed in JavaScript
sacdallago/consurf_extractor
sacdallago/embed.protein.properties
sacdallago/mecu
TPCA data analysis tool
sacdallago/nCoV
sacdallago/protein
sacdallago/pyFIFOtax
Simple Tax Reporting Tool for share transactions on foreign exchanges
sacdallago/sacdallago.github.io
sacdallago/tum_csd
sacdallago/bed_management_frontend
sacdallago/cog-examples
Some models defined with Cog to show you how it works
sacdallago/complexes.protein.properties
sacdallago/dead_easy_blog
I was frustrated with all the blog stuff out there, so I wrote my own (exactly what you should not do!)
sacdallago/deep-chain-apps
A library for deploying App on deepchain.bio
sacdallago/deep-review
A collaboratively written review paper on deep learning, genomics, and precision medicine
sacdallago/disorder_from_disprot
sacdallago/grounding-search
A biological entity grounding search service
sacdallago/IPI_to_UniProt
Simple IPI to UniProt Accession (first hit) conversion
sacdallago/MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suite
sacdallago/nightingale
Data visualisation web components for the life sciences.
sacdallago/ProtTrans
ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit and hundreds of Google TPUs using Transformers Models.
sacdallago/rootstock
Clone me to create your Manubot manuscript
sacdallago/TMbed
Transmembrane proteins predicted through Language Model embeddings
sacdallago/uniprot_subcellular_location_extraction
Extract subcellular location of any protein query on UniProt
sacdallago/vq-vae-2-pytorch
Implementation of Generating Diverse High-Fidelity Images with VQ-VAE-2 in PyTorch