greenelab/deep-review

Issues

• Consider change to reference 346

  #1032 opened 2 years ago by OmnesRes
  9

• Authors Since Publication

  #959 opened 5 years ago by cgreene
  11

• Update in Proteomics mass spectrometry

  #1029 opened 3 years ago by aky
  2

• feature and labels

  #1026 opened 4 years ago by Mohamed-ElhajAbdou
  1

• Alpha Fold 2

  #1025 opened 4 years ago by agitter
  1

• Titrating gene expression using libraries of systematically attenuated CRISPR guide RNAs

  #1023 opened 4 years ago by gwaybio
  3

• Add a Systematic Text-Mining Component to the Review?

  #1022 opened 4 years ago by swamidass
  3

• Update for 2020?

  #1021 opened 4 years ago by swamidass
  3

• Call for Methylation Section

  #942 opened 4 years ago by jlevy44
  53

• How can one cite this dynamic review?

  #1018 opened 4 years ago by vd4mmind
  3

• Human Protein Atlas (HPA) Cell Type Prediction using Deep Learning and estimating uncertainty

  #1017 opened 5 years ago by birajaghoshal
  2

• DeepArk: modeling cis-regulatory codes of model species with deep learning

  #1016 opened 5 years ago by evancofer
  0

• LISA: Towards Learned DNA Sequence Search

  #1015 opened 5 years ago by evancofer
  1

• Update subsection: Structure-based prediction of bioactivity

  #1011 opened 5 years ago by 0ut0fcontrol
  2

• Section Status: Electronic health records

  #967 opened 5 years ago by cgreene
  6

• Potential Reorganization

  #1005 opened 5 years ago by manolik
  7

• Applications in sleep research

  #1013 opened 5 years ago by SystemsResearch
  2

• Update 'Imaging applications in healthcare'

  #1012 opened 5 years ago by SystemsResearch
  0

• Hidden bias in the DUD-E dataset leads to misleading performance of deep learning in structure-based virtual screening

  #1010 opened 5 years ago by 0ut0fcontrol
  0

• In Need of Bias Control: Evaluating Chemical Data for Machine Learning in Structure-Based Virtual Screening

  #1009 opened 5 years ago by 0ut0fcontrol
  0

• Predicting or Pretending: Artificial Intelligence for Protein-Ligand Interactions Lack of Sufficiently Large and Unbiased Datasets

  #1008 opened 5 years ago by 0ut0fcontrol
  0

• Deepprune: Learning Efficient and Interpretable Convolutional Networks Through Weight Pruning for Predicting DNA-Protein Binding

  #1007 opened 5 years ago by evancofer
  0

• Deep Learning for the Life Sciences

  #1006 opened 5 years ago by agitter
  0

• Update COI Table for v1 authors at release.

  #1004 opened 5 years ago by cgreene
  0

• Create funding information automatically

  #996 opened 5 years ago by cgreene
  1

• Quick View / Diffs and/or Updated Sections

  #1001 opened 5 years ago by cgreene
  8

• Update section: Protein secondary and tertiary structure

  #1000 opened 5 years ago by sacdallago
  4

• Note v1/v2 contributions on the header page.

  #993 opened 5 years ago by cgreene
  0

• Disease State Prediction From Single-Cell Data Using Graph Attention Networks

  #990 opened 5 years ago by stephenra
  0

• Black Box Recursive Translations for Molecular Optimization

  #989 opened 5 years ago by stephenra
  0

• Update this manuscript's thumbnail

  #980 opened 5 years ago by vincerubinetti
  0

• Enabling AppVeyor previews

  #979 opened 5 years ago by agitter
  2

• Reference Error in Royal Society Paper

  #975 opened 5 years ago by smthomas-sci
  1

• Section Status: Will deep learning transform the study of human disease?

  #964 opened 5 years ago by cgreene
  3

• Human microbiome aging clocks based on deep learning and tandem of permutation feature importance and accumulated local effects

  #943 opened 6 years ago by evancofer
  0

• Proof-of-concept for reasoning over the SemMedDB knowledge base, using miniKanren + heuristics + indexing.

  #972 opened 5 years ago by renesugar
  7

• DeSigN: connecting gene expression with therapeutics for drug repurposing and development

  #973 opened 5 years ago by renesugar
  1

• Update Section: Challenges and opportunities in healthcare

  #968 opened 5 years ago by cgreene
  0

• Section Status: Text applications in healthcare

  #966 opened 5 years ago by cgreene
  0

• Section Status: Imaging applications in healthcare

  #965 opened 5 years ago by cgreene
  0

• Update Section: Intro to DL

  #963 opened 5 years ago by cgreene
  0

• Update Section: Abstract

  #962 opened 5 years ago by cgreene
  0

• Table of contents for paper

  #957 opened 5 years ago by AnneCarpenter
  7

• Class imbalance in Deepr

  #950 opened 5 years ago by NandhiniSubramanyan
  1

• DeepFreak: Learning Crystallography Diffraction Patterns with Automated Machine Learning

  #953 opened 6 years ago by evancofer
  0

• AmpliconNet: Sequence Based Multi-layer Perceptron for Amplicon Read Classification Using Real-time Data Augmentation

  #944 opened 6 years ago by ali-kishk
  4

• U-Net: deep learning for cell counting, detection, and morphometry

  #948 opened 6 years ago by gwaybio
  2

• Harmonization and Annotation of Single-cell Transcriptomics Data with Deep Generative Models

  #949 opened 6 years ago by stephenra
  0

• A guide to deep learning in healthcare

  #946 opened 6 years ago by evancofer
  0

• Identifying facial phenotypes of genetic disorders using deep learning

  #945 opened 6 years ago by evancofer
  0