sanger-pathogens/circlator

Issues

• circlator stuck

  #188 opened 4 months ago by jpinus
  1

• circlator Command Fails with ModuleNotFoundError: No module named 'pkg_resources'

  #190 opened 2 months ago by AymanMkhalifa
  0

• Would circulator change the assembly?

  #189 opened 2 months ago by isabelluo
  0

• Error running fixstart with Docker:latest

  #185 opened 6 months ago by erinyoung
  0

• Found canu but couldn't get version. (canu 2.2)

  #178 opened 3 years ago by ppflrs
  2

• Assembler canu run gets terminated

  #177 opened 3 years ago by Rmmendoza
  1

• what's meaning of the original_assembly.fasta and new_assembly.fasta?

  #172 opened 4 years ago by wanjinhu
  1

• Should the assembly be a reference genome?

  #181 opened 2 years ago by elcortegano
  1

• AMOS installation error

  #183 opened 2 years ago by ChongLC
  0

• circlator failed to detect Canu 'suggestCircular=yes' contigs

  #161 opened 5 years ago by bitcometz
  2

• Mitochondrial Fixstart - Control Region as Origin

  #180 opened 2 years ago by JamesHowie14
  0

• error with circlator

  #179 opened 3 years ago by sekhwal
  0

• Invalid kmer coverage histogram

  #165 opened 4 years ago by s4251484
  1

• circlator test fails at merge step

  #169 opened 4 years ago by davidjstudholme
  3

• Circlator seems to run forever

  #173 opened 4 years ago by tnn111
  2

• Circlator for polished genome

  #174 opened 4 years ago by rthapa1
  1

• Use Circlator with nanopore reads of ancestral strain

  #176 opened 3 years ago by SamuelGreenrod
  0

• canu version

  #152 opened 5 years ago by aistBMRG
  2

• Circlator python3 setup.py test errors

  #130 opened 7 years ago by pichiapastoris
  1

• Using spades --isolate option in circlator all

  #171 opened 4 years ago by brettmorg
  0

• Java requirement error in java

  #140 opened 4 years ago by conchoecia
  3

• "Version of nucmer too low. I found ., but must be at least 3.1."

  #127 opened 7 years ago by MattPinder
  3

• Version of numcer too low (v1.5.5)

  #143 opened 6 years ago by mkillean
  6

• --spades_k error when using all

  #146 opened 4 years ago by nblouin
  1

• no specific circularization record

  #167 opened 4 years ago by zhaoxvwahaha
  0

• Should we do polish（racon+pilon） or circlator first

  #166 opened 4 years ago by zhaoxvwahaha
  0

• Paired-end reads

  #164 opened 4 years ago by DarrenObbard
  0

• fixstart stringency

  #163 opened 4 years ago by rjsorr
  1

• Didn't find canu in path. Looked for:canu

  #162 opened 4 years ago by jellila
  3

• If these two matches are the same, then the second longest match is used.

  #160 opened 5 years ago by bitcometz
  0

• circlator and amos conflict with python distribution

  #159 opened 5 years ago by Ram-Nagar
  0

• Found canu but couldn't get version on Linux system

  #158 opened 5 years ago by liaochenlanruo
  0

• Could not obtain circular genome!!

  #154 opened 5 years ago by sneupane01
  0

• Problem with option gnuplotTested=true when calling canu

  #149 opened 6 years ago by guibar
  4

• Command "python setup.py egg_info" failed with error code 1

  #128 opened 7 years ago by wispingwillow
  2

• Question about genome circularization

  #142 opened 6 years ago by Nifaste
  6

• circlator minimus2 : exited with status: 1

  #121 opened 7 years ago by xxz19900
  2

• After running circlator reduction of 6 genomes in assembly to 3.

  #150 opened 5 years ago by severst
  0

• Failed to Partition the reads

  #147 opened 6 years ago by Frazapel
  0

• Can I use it to circulate viral genomes

  #145 opened 6 years ago by housw
  0

• canu 1.6 does not contain v. in its version

  #129 opened 7 years ago by gerald2545
  1

• Error making output directory

  #139 opened 6 years ago by conchoecia
  0

• adding Racon assembly pipeline

  #134 opened 6 years ago by mictadlo
  1

• Racon assembly output with circlator

  #133 opened 6 years ago by mictadlo
  2

• error during step3 assembly

  #132 opened 6 years ago by wenluo711
  0

• bwa_opts not applicable to nanopore data for the merge stage

  #131 opened 6 years ago by zhaoc1
  0

• Infinite recursion in clean.py ?

  #123 opened 7 years ago by aWormGuy
  1

• nucmer version detected by "circlator progcheck" but not "circlator all"

  #122 opened 7 years ago by MattPinder
  3

• Problems running progcheck, error with installation?

  #124 opened 7 years ago by caonetto
  1

• Clarification regarding nanopore data

  #119 opened 7 years ago by lfaller
  2