sdtemple

sdtemple's Stars

• jupyter/docker-stacks

  Ready-to-run Docker images containing Jupyter applications

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• jaraco/keyring

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• benmoseley/harmonic-oscillator-pinn

  Code accompanying my blog post: So, what is a physics-informed neural network?

  Language:Jupyter Notebook575186159

• adw96/biostat561

  Course materials for BIOST561

  Language:R27037070

• tskit-dev/msprime

  Simulate genealogical trees and genomic sequence data using population genetic models

  Language:Python183201k86

• szpiech/selscan

  Haplotype based scans for selection

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• zhengxwen/SNPRelate

  R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)

  Language:C++1041310325

• sigvaldm/localreg

  Multivariate Local Polynomial Regression and Radial Basis Function Regression

  Language:Python482134

• 23andMe/phasedibd

  Identity-by-descent inference using the templated positional Burrows-Wheeler transform (TPBWT)

  Language:Cython419711

• alek0991/iSAFE

  Pinpoints the mutation favored by selection

  Language:Python3341711

• browning-lab/flare

  The flare program performs local ancestry inference

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• mathiesonlab/pg-gan

  Language:Python33149

• ramachandran-lab/SWIFr

  Sweep Inference Framework (controlling for correlation)

  Language:OpenEdge ABL29634

• mfumagalli/ImaGene

  Estimation of population genetic parameters using deep learning

  Language:Jupyter Notebook284510

• yairf/SDS

  R code to compute the Singleton Density Score (SDS)

  Language:R28679

• standard-aaron/clues

  Coalescent Likelihood Under Effects of Selection - Inferring selection & allele frequency trajectories from nucleotide data

  Language:Python254125

• jbloomlab/SARS2-mut-fitness

  Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates

  Language:Jupyter Notebook19375

• CshlSiepelLab/arg-selection

  ARG-based inference of selection using deep learning

  Language:Python17333

• pierpal/ARGON

  Fast, whole-genome simulation of the discrete time Wright-Fisher process

  Language:Java16513

• AdityaLab/EINNs

  [AAAI-23] Epidemiologically-informed Neural Networks

  Language:Python131111

• avaughn271/CLUES2

  The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.

  Language:Python8151

• rwaples/lai-sim

  Language:Python8311

• leospeidel/relate_lib

  C++ library containing functions for parsing/dumping Relate output files

  Language:C++6161

• mathiesonlab/disc-pg-gan

  Language:Python52

• GertjanBisschop/SweepsInTime

  Repository containing all notebooks and scripts for Bisschop et al. 2020. Sweeps In Time.

  Language:Mathematica4201

• ngwelch/uwbeamer

  Beamer template that conforms to UW branding standards

  Language:TeX4100

• sdtemple/btvoccu

  Bayesian Time-Varying Occupancy Modeling

  Language:R2100

• lanl/culexmaxentmodels

  netCDF files of Culex habitat suitability values

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• sdtemple/pblas

  Pair-based likelihood approximations

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• sdtemple/sdtemple.github.io

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