shawnzhangyx/PePr

Issues

• Missing tags?

  #36 opened 2 years ago by Apteryks
  1

• Question about differential analysis

  #35 opened 4 years ago by re2srm
  2

• ATAC-seq/DNase-seq Analysis

  #21 opened 8 years ago by robertamezquita
  13

• PePr pooling of replicates or individual calling of peaks

  #34 opened 6 years ago by abhisheksinghnl
  3

• Python3: index-based access to data view

  #33 opened 6 years ago by ptrebert
  2

• Omicspedia Unreachable

  #32 opened 6 years ago by aakashsur
  2

• RuntimeWarning

  #31 opened 7 years ago by aakashsur
  1

• Running PePr with Input and IgG controls

  #28 opened 7 years ago by yeroslaviz
  1

• array init fails in Python3

  #30 opened 7 years ago by ptrebert
  4

• Help needed

  #29 opened 7 years ago by joshuabhk
  7

• KeyError in post_process_PePr.py

  #27 opened 7 years ago by alacrity8
  3

• libhts.so.1 import error

  #25 opened 7 years ago by abalter
  5

• Error during peak-calling (KeyError)

  #26 opened 8 years ago by c-guzman
  6

• bioconda release

  #24 opened 8 years ago by jasper1918
  3

• PePr differential binding analysis killed

  #20 opened 8 years ago by nam10san
  4

• ImportError: No module named PePr

  #19 opened 8 years ago by AlicePsyche
  5

• chip3 and input3 parameters adding

  #17 opened 8 years ago by mictadlo
  1

• Chromosome names require leading "chr"

  #22 opened 8 years ago by robertamezquita
  1

• chrY error

  #23 opened 8 years ago by will-NYGC
  7

• ValueError: negative dimensions are not allowed

  #18 opened 8 years ago by mictadlo
  3

• Galaxy wrapper for PePr

  #14 opened 8 years ago by mictadlo
  5

• Modify setup.py a bit

  #9 opened 8 years ago by rjeschmi
  3

• Remove chip1 / chip2 intersecting regions

  #16 opened 8 years ago by rcavalcante
  3

• website is unsafe

  #13 opened 8 years ago by plijnzaad
  2

• add support for paired-end reads

  #8 opened 8 years ago by shawnzhangyx
  4

• add an error handler

  #7 opened 8 years ago by shawnzhangyx
  0

• Feature Addition: Output directory parameter

  #11 opened 8 years ago by rcavalcante
  1

• q-value greater than 1.

  #12 opened 8 years ago by shawnzhangyx
  1

• the sam file parser for bitwise flag is wrong.

  #4 opened 8 years ago by shawnzhangyx
  1

• Bug fix and improvement as of June 21, 2014

  #1 opened 8 years ago by shawnzhangyx
  0

• numpy/scipy versions

  #6 opened 9 years ago by daler
  4

• postprocessing issue

  #5 opened 10 years ago by shawnzhangyx
  0

• add support for the same input files to be used for both chip groups

  #3 opened 10 years ago by shawnzhangyx
  0

• bug report as of july 29, 2014

  #2 opened 10 years ago by shawnzhangyx
  0