shenscore

shenscore's Stars

• HumanSignal/label-studio

  Label Studio is a multi-type data labeling and annotation tool with standardized output format

  Language:JavaScript18.4k1742.2k2.3k

• jacobgil/pytorch-grad-cam

  Advanced AI Explainability for computer vision. Support for CNNs, Vision Transformers, Classification, Object detection, Segmentation, Image similarity and more.

  Language:Python10.3k444091.5k

• rtqichen/torchdiffeq

  Differentiable ODE solvers with full GPU support and O(1)-memory backpropagation.

  Language:Python5.5k125216909

• satijalab/seurat

  R toolkit for single cell genomics

  Language:R2.3k737.9k906

• chemprop/chemprop

  Message Passing Neural Networks for Molecule Property Prediction

  Language:Python1.7k37528573

• scverse/scvi-tools

  Deep probabilistic analysis of single-cell and spatial omics data

  Language:Python1.2k251k344

• bowang-lab/scGPT

  Language:Jupyter Notebook99635225190

• ablab/spades

  SPAdes Genome Assembler

  Language:C++738321.2k134

• netsarang/Xshell-ColorScheme

  250+ Xshell Color Schemes

  654312175

• CGATOxford/UMI-tools

  Tools for handling Unique Molecular Identifiers in NGS data sets

  Language:Python48036491190

• cole-trapnell-lab/monocle3

  Language:R32821639101

• biomap-research/scFoundation

  Language:Jupyter Notebook23585437

• zhangyuqing/ComBat-seq

  Batch effect adjustment based on negative binomial regression for RNA sequencing count data

  Language:R15764339

• vkola-lab/tmi2022

  A graph-transformer for whole slide image classification

  Language:Python14051934

• Dragonmasterx87/Interactive-3D-Plotting-in-Seurat-3.0.0

  This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

  Language:R1167828

• Manchery/ImageLabeler

  基于Qt实现的图片数据标注工具. Image Annotation Tool Based on Qt, supporting 2D/3D Detection/Segmentation Annotation.

  Language:C++1081539

• FredHutch/SEACR

  SEACR: Sparse Enrichment Analysis for CUT&RUN

  Language:Shell9998843

• hyunhwan-jeong/SalmonTE

  SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

  Language:Jupyter Notebook8197923

• YichaoOU/HemTools

  HemTools: a collection of NGS pipelines and bioinformatic analyses

  Language:Python643317

• OSU-BMBL/deepmaps

  Single-cell biological network inference using a heterogeneous graph transformer

  Language:HTML63464

• XiaoTaoWang/HiCLift

  A fast and efficient tool for converting chromatin interaction data between genome assemblies

  Language:Python633174

• mlbendall/telescope

  Quantification of transposable element expression using RNA-seq

  Language:Python6275115

• ay-lab/dcHiC

  dcHiC: Differential compartment analysis for Hi-C datasets

  Language:R6059410

• ggjlab/scMCA

  Mouse cell atlas

  Language:R589418

• nf-core/differentialabundance

  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq

  Language:Nextflow5714311232

• AndreasHeger/gat

  Genomic Association Tester

  Language:Python2911515

• yutongo/TIGON

  Language:Jupyter Notebook28143

• AmpliconSuite/CycleViz

  Visualize outputs of AmpliconArchitect and AmpliconReconstructor in Circos-style images.

  Language:Python21586

• yanyanzou0721/GWIFA

  Genome-wide interaction fluctuation analysis

  Language:Python4200

• clouds-drift/eSPAN-bias

  Bias calculation for eSPAN experiments

  Language:R2100