shingocat/lrscaf

Issues

• lrscaf throws an error with ont mapped reads from minimap2

  #36 opened 3 years ago by andrewkern
  3

• Can the -m4 format generated by BLASR be replaced by the sam format generated by BWA?

  #37 opened 2 years ago by LGliuliuliu
  0

• might be inconsistent log messages?

  #34 opened 3 years ago by Gjocund
  1

• about gaps

  #35 opened 3 years ago by xieyy46
  1

• Is <tips_length> a wrong parameter name

  #33 opened 3 years ago by Gjocund
  1

• Launching error and empty edges

  #32 opened 3 years ago by khush876
  1

• Nanopore alignment with PACBIO

  #31 opened 3 years ago by khush876
  1

• Null alignment file

  #29 opened 3 years ago by JuliaLopezDelgado
  1

• duplicated contigs in scaffolds in human assembly. assembly size goes up to 3.24Gbp from 2.85Gbp

  #30 opened 3 years ago by alekseyzimin
  2

• More duplication ?

  #22 opened 4 years ago by ptranvan
  2

• Inability to parse iqrt parameter

  #28 opened 4 years ago by tararickman
  2

• Parameters for contiguous assemblies

  #27 opened 4 years ago by A-J-F-Mackintosh
  2

• Can lrscaf accept 'scaffolds' as input instead of 'contigs'?

  #25 opened 4 years ago by xiekunwhy
  1

• error while running LRscaff

  #26 opened 4 years ago by flegeai
  1

• Long stretches of homopolymers

  #11 opened 4 years ago by francicco
  26

• agis.ps.file.M4Reader error and PathBuilder error

  #24 opened 4 years ago by wufabai
  1

• nodePaths.info could not be created LRScaf-1.1.10

  #23 opened 4 years ago by igorantoshechkin
  2

• Output and parameters

  #19 opened 4 years ago by ptranvan
  5

• Reading gzipped PAFs

  #21 opened 4 years ago by andreaswallberg
  1

• agis.ps.file.MMReader and PathBuilder ? errors

  #20 opened 4 years ago by faguil
  2

• Contig used more than once ?

  #18 opened 4 years ago by ptranvan
  3

• [ ERROR ] PathBuilder ： The Edges could not be empty

  #17 opened 5 years ago by LisaBlazek
  1

• LRScaf-1.1.8 stuck at "Finding repeats"

  #14 opened 5 years ago by bvaldebenitom
  3

• Troubleshooting errors

  #7 opened 5 years ago by 000generic
  13

• PacBio raw reads or corrected ?

  #15 opened 5 years ago by ptranvan
  1

• Composition of scaffolds ?

  #16 opened 5 years ago by ptranvan
  1

• error following tutorial

  #13 opened 5 years ago by nsmackler
  5

• Example configuration deletes assembly and minimap results

  #12 opened 5 years ago by jguhlin
  1

• LRScaf running slow

  #10 opened 5 years ago by Lutri22
  4

• [ ERROR ] agis.ps.graph.DirectedGraph

  #9 opened 6 years ago by MeiFangLin
  2

• Error PathBuilder

  #8 opened 6 years ago by MeiFangLin
  2

• error of The Edges could not be empty

  #3 opened 6 years ago by tiramisutes
  11

• Ns after Scaffolding contigs containing no Ns

  #4 opened 6 years ago by sanjitsbatra
  3

• What does mmcm mean?

  #5 opened 6 years ago by wangshun1121
  1

• How to improve continuity of scaffolds?

  #6 opened 6 years ago by wangshun1121
  7

• What tools to compile？

  #1 opened 6 years ago by cnsms
  1

• args error

  #2 opened 6 years ago by orangeSi
  3