sinsukehlab

sinsukehlab's Stars

• zed-industries/zed

  Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.

  Language:Rust51.9k22710.1k3.3k

• LadybirdBrowser/ladybird

  Truly independent web browser

  Language:C++26.6k1585931.1k

• githubnext/monaspace

  An innovative superfamily of fonts for code

  Language:TypeScript14.6k58211250

• zotero/zotero

  Zotero is a free, easy-to-use tool to help you collect, organize, annotate, cite, and share your research sources.

  Language:JavaScript10.7k1363.5k776

• SakanaAI/AI-Scientist

  The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑‍🔬

  Language:Jupyter Notebook8.5k1051151.2k

• SAWARATSUKI/KawaiiLogos

  4.2k32151120

• POV-Ray/povray

  The Persistence of Vision Raytracer (POV-Ray)

  Language:C++1.4k102311282

• schrodinger/pymol-open-source

  Open-source foundation of the user-sponsored PyMOL molecular visualization system.

  Language:C1.2k39328287

• Ligo-Biosciences/AlphaFold3

  Open source implementation of AlphaFold3

  Language:Python942221383

• MuiseDestiny/zotero-attanger

  Attachment Manager for Zotero

  Language:TypeScript774816114

• windingwind/zotero-plugin-template

  A plugin template for Zotero.

  Language:TypeScript4981343116

• pharmai/plip

  Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294

  Language:Python47316111107

• uw-ipd/RoseTTAFold2NA

  RoseTTAFold2 protein/nucleic acid complex prediction

  Language:Python3361610677

• tsg-ut/awesome-prml-ja

  インターネット各地に散逸する「パターン認識と機械学習」の解説資料を集約するリポジトリ

  2642307

• project-gemmi/gemmi

  macromolecular crystallography library and utilities

  Language:C++2371719046

• microsoft/protein-frame-flow

  Fast protein backbone generation with SE(3) flow matching.

  Language:Python236101422

• 3dem/model-angelo

  Automatic atomic model building program for cryo-EM maps

  Language:Python12998821

• snugel/cas-offinder

  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.

  Language:C++8653827

• kiharalab/DiffModeler

  DiffModeler: a diffusion model based protein complex structure modeling tool.

  Language:Python41374

• kiharalab/CryoREAD

  CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.

  Language:Python28444

• lightdock/lightdock-rust

  A Rust implementation of the LightDock macromolecular docking software

  Language:Rust26985

• kiharalab/Emap2secPlus

  Emap2sec+: Detecting Protein and DNA/RNA Structures in Cryo-EM Maps of Intermediate Resolution Using Deep Learning

  Language:Jupyter Notebook17329

• CueMol/cuemol2

  CueMol: Molecular Visualization Framework

  Language:C++168

• kiharalab/Emap2sec

  Emap2sec is a computational tool to identify protein secondary structures

  Language:Jupyter Notebook16247

• kiharalab/DAQ

  DAQ: Residue-Wise Local Quality Estimation for Protein Models from Cryo-EM Maps

  Language:C13421

• kiharalab/DeepMainMast

  DeepMainmast

  Language:C11112

• michaelprabhuu/Custom-GPT-using-Open-AI-APIs

  Create a custom GPT for your organization with file search. This demo shows how to create an assistant, set up a vector store, upload and connect files to it, link the store to the assistant, create a thread to query the file, and receive responses using runs. Enhance your organization's knowledge retrieval effortlessly.

  Language:HTML10304

• meduzen/blog

  Notes, articles, rants.

  Language:JavaScript4270

• kiharalab/ComplexModeler

  Language:Python3200

• yukiregista/DSC_STUDY

  Language:Jupyter Notebook13