sjessa

sjessa's Stars

• jasonjmcghee/rem

  An open source approach to locally record and enable searching everything you view on your Mac.

  Language:Swift2.3k236169

• hng/tech-coops

  A list of tech coops and resources concerning tech coops and worker owned cooperatives in general.

  2k1010165

• GeostatsGuy/PythonNumericalDemos

  Well-documented Python demonstrations for spatial data analytics, geostatistical and machine learning to support my courses.

  Language:Jupyter Notebook1.4k649493

• rmcelreath/stat_rethinking_2024

  Language:R1.4k612133

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook1.2k2359149

• easystats/easystats

  :milky_way: The R easystats-project

  Language:R1.1k3031978

• omnivore-app/obsidian-omnivore

  Obsidian plugin to fetch articles and highlights from Omnivore

  Language:TypeScript8461016590

• TutteInstitute/datamapplot

  Creating beautiful plots of data maps

  Language:Python804153451

• pinellolab/DNA-Diffusion

  🧬 Generative modeling of regulatory DNA sequences with diffusion probabilistic models 💨

  Language:Python3731312052

• rust-bio/rust-htslib

  This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

  Language:Rust3122916581

• kaizhang/SnapATAC2

  Single-cell epigenomics analysis tools

  Language:Python241930027

• google/patrick

  Parameterized testing in R is kind of cool!

  Language:R13551413

• SFPC/finance-and-administration

  "To radical openness and generosity." Public data and reflections on finance and administration from the School for Poetic Computation.

  1303629

• cellgeni/schard

  reticulate-free single cell format conversion

  Language:R97454

• vsbuffalo/granges

  A Rust library and command line tool for working with genomic ranges and their data.

  Language:Rust95396

• jzhoulab/orca

  sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale

  Language:Python813521

• iskandr/bcb731

  Defense Against the Dark Arts

  Language:Jupyter Notebook77601

• posit-conf-2023/pkg-dev-masterclass

  Materials for the Package Development Masterclass workshop held at posit::conf(2023)

  601017

• jmschrei/ledidi

  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.

  Language:Jupyter Notebook57621

• althonos/lightmotif

  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.

  Language:Rust42442

• jmschrei/bpnet-lite

  This repository hosts a minimal version of a Python API for BPNet.

  Language:Python3351314

• AllenInstitute/mfishtools

  Building Gene Sets and Mapping mFISH Data

  Language:HTML16496

• bernardo-de-almeida/DeepSTARR_embryo

  Deep learning models to predict enhancers in different Drosophila embryo tissues

  Language:Jupyter Notebook16200

• jn-goe/gruffi

  Granular Functional Filtering (Gruffi) to isolate stressed cells

  Language:R121196

• Danko-Lab/clipnet

  A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution

  Language:Python9512

• IGVF/atomic-workflows

  Workflows for pre-processing sequencing data from sequence census assays

  Language:Jupyter Notebook6522

• austintwang/finemo_gpu

  Language:Python5261

• KellisLab/benj

  benj benj benj

  Language:Python5301

• Danko-Lab/clipnet_paper

  Scripts and notebooks to reproduce figures used in the CLIPNET paper

  Language:Jupyter Notebook2400

• zafarali/urbanistview

  Language:HTML120