sjessa

sjessa's Stars

• srush/GPU-Puzzles

  Solve puzzles. Learn CUDA.

  Language:Jupyter Notebook10.1k19332936

• srush/Tensor-Puzzles

  Solve puzzles. Improve your pytorch.

  Language:Jupyter Notebook3.3k1320291

• bepaald/signalbackup-tools

  Tool to work with Signal Backup files.

  Language:C++8441724740

• stencila/stencila

  Documents with Scientific Intelligence

  Language:Rust8052782247

• jespermaag/gganatogram

  Create anatograms using ggplot2

  Language:R38392752

• Genentech/gReLU

  gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

  Language:Python23494323

• mhammell-laboratory/TEtranscripts

  A package for including transposable elements in differential enrichment analysis of sequencing datasets.

  Language:Python2311920931

• markvanderloo/tinytest

  A lightweight, no-dependency, but full-featured package for unit testing in R

  Language:R2261010620

• teuder/rcpp4everyone_en

  Rcpp for everyone

  Language:TeX216121430

• thebioengineer/camcorder

  Record plots generated during an R session and replay as a gif!

  Language:R2045257

• loosolab/TOBIAS

  Transcription factor Occupancy prediction By Investigation of ATAC-seq Signal

  Language:Python2011627139

• yihui/litedown

  A lightweight version of R Markdown

  Language:R1867475

• scikit-learn-contrib/skglm

  Fast and modular sklearn replacement for generalized linear models

  Language:Python162911234

• GreenleafLab/NucleoATAC

  nucleosome calling using ATAC-seq

  Language:Python106199231

• kenhanscombe/ukbtools

  An R package to manipulate and explore UK Biobank data

  Language:HTML9794326

• brentp/slurmpy

  submit jobs to slurm with quick-and-dirty python

  Language:Python957734

• stemangiola/CuratedAtlasQueryR

  Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.

  Language:R895757

• openproblems-bio/openproblems-v2

  Formalizing and benchmarking open problems in single-cell genomics

  Language:Python5639419

• vsoch/forward

  Port Forwarding Utility

  Language:Shell5382727

• caleblareau/gchromVAR

  Cell type specific enrichments using finemapped variants and quantitative epigenetic data

  Language:R427139

• GreenleafLab/NucleoATACR

  R package for reading in & working with NucleoATAC outputs

  Language:R2610212

• joelparkerhenderson/icebreaker-questions

  Icebreaker questions to help people, groups, teams, meetings, and such

  21403

• jzhoulab/puffin_manuscript

  Language:Jupyter Notebook16124

• simonpcouch/syrup

  Measure Memory and CPU Usage of R Code

  Language:R16180

• RoseYuan/sc_chromatin_benchmark

  Benchmarking computational methods for single-cell ATAC-seq and CUT&Tag

  Language:R14134

• zeitlingerlab/Brennan_Zelda_2023

  Code for data analysis and processing of Brennan et al regarding Zelda's role as a pioneer.

  Language:HTML7200

• aertslab/DeepBrain

  DeepBrain: a collection of vertebrate sequence-based enhancer models aimed at understanding brain cell type enhancer code across and within species

  Language:Jupyter Notebook5400

• stephenslab/susie-paper

  Experiments on SuSiE ("sum of single effects") regression.

  Language:Jupyter Notebook55133

• zrcjessica/sc-power-analysis

  Power analysis for scRNA-seq data

  Language:R4220

• zrcjessica/ml_concepts

  A collection of Jupyter notebooks containing tutorials for various machine learning concepts.

  Language:Jupyter Notebook2200