docker image for mzR

Question

docker image for mzR

shubham1637 opened this issue 4 years ago · 2 comments

shubham1637 commented 4 years ago

Hi,
Is there any docker image for installing mzR? I am trying to run mzR on HPC using singularity.

Thanks!

Answer 1 · 2020-11-10T23:07:46.000Z

Yes, the Bioconductor containers should have mzR.

Answer 2 · 2020-11-11T06:51:33.000Z

Just to expand on @lgatto's reply - the docker containers have all the required libraries to install mzR, so you'll have to create a sif image from the Bioconductor container (with singularity pull) and use the same setup as described for the bioconductor containers (i.e. bind an external directory to the singularity/docker to install all R packages there). I'm also using singularity on our clusters with that, works well.