sridhar0605's Stars
snakemake-workflows/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
quinlan-lab/applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2020
kevinblighe/ClinicalGradeDNAseq
Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18
Abhishekmamidi123/100DaysOfMLCode
Learning Machine Learning and showcasing my work for 100 Days.
pyslackers/learning-resources
Collection of resources recommended by community members for learning various python programming topics.
lkmklsmn/SplicER
Analytic scheme for the analysis of Splicing Efficiency in RNA-seq data
tanghaibao/jcvi
Python library to facilitate genome assembly, annotation, and comparative genomics
griffithlab/regtools
Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
clintval/snakescale
Non-strict wrappers for the data pipelining language Snakemake
Roth-Lab/pyclone
Probabilistic model for inferring clonal population structure from deep NGS sequencing.
Pierian-Data/Complete-Python-3-Bootcamp
Course Files for Complete Python 3 Bootcamp Course on Udemy
csoulette/projects
repository for project specific scripts
wckdouglas/tgirtERCC
stevekm/fastq-filter-bed
filter fastq.gz files based on genomic regions in a .bed file
alevar/chimFinder
Foreign DNA/RNA integration site detection
dib-lab/gimme
gene modeller for RNAseq data based on assembly and alignment to reference genome.
ifiddes/notch2nl_10x
byee4/junction-counter
counts reads that support excluded exon-intron junctions
shassathe/ShapeSeq_Shiskin
This repo contains analysis script specific to data generated using the in-house Shiskin protocol for ShapeSeq
umccr/10x
:rocket: 10X dumping ground
crazyhottommy/pyflow-ChIPseq
a snakemake pipeline to process ChIP-seq files from GEO or in-house
alimanfoo/pysamstats
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
huangyh09/brie
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
seandavi/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
davidlmorton/fastai-course-sconce
Jupyter Notebooks for the fast.ai deep learning course, recreated using pytorch-sconce.
CrescentLuo/T-atlas
Transcriptome Atlas
crazyhottommy/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
jrderuiter/pybiomart
A simple pythonic interface to biomart.
pkimes/spliceclust
visualization tools for exon/junction coverage
McIntyre-Lab/splicing
Python scripts for generating splicing annotations