Pinned Repositories
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
brc-parser
bam-readcount parser
hpackedbubble
Create Split Packed Bubble Charts
kraken-review
🦑 Visualize phylogenetic trees from the taxonomic sequence classifier: Kraken
mxnet
Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more
Qiime16sTutorial
A tutorial on up-to-date methods of 16S analysis with QIIME
seurat_docker
docker image seurat
SPLICE-q
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
training-collection
Collection of bioinformatics training materials
sridhar0605's Repositories
sridhar0605/training-collection
Collection of bioinformatics training materials
sridhar0605/brc-parser
bam-readcount parser
sridhar0605/SPLICE-q
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
sridhar0605/100DaysOfAWS
sridhar0605/analysis-wdls
Early stages of converting genome/analysis-workflows from CWL to WDL
sridhar0605/analysis-workflows
Open workflow definitions for genomic analysis from MGI at WUSM.
sridhar0605/bam-readcount
Count bases in BAM/CRAM files
sridhar0605/BigBookofR
The biggest collection of R books (and maybe later some other resources too)
sridhar0605/cloud-workflows
Infrastructure and tooling required to get genomic workflows running in the cloud
sridhar0605/d3-tube-map
Draw tube maps in the style of the London Underground using d3
sridhar0605/espresso
sridhar0605/ggkegg
Analyzing and visualizing KEGG information using the grammar of graphics
sridhar0605/ggpattern
ggplot geoms with pattern fills
sridhar0605/hvplot_interactive
sridhar0605/IsoVis
IsoVis enables fast and informative visualization of isoform structures and expression levels.
sridhar0605/mercury
Mercury: easily convert Python notebook to web app and share with others
sridhar0605/minion_qc
Quality control for MinION sequencing data
sridhar0605/nf-core-rnanano
Nextflow pipeline for analysis of Nanopore RNA sequencing
sridhar0605/pyCirclize
Circular visualization in Python (Circos Plot, Chord Diagram)
sridhar0605/PythonNumericalDemos
Well-documented Python demonstrations for spatial data analytics, geostatistical and machine learning to support my courses.
sridhar0605/rMATS-long
sridhar0605/RNA-seq
A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample
sridhar0605/rust-data-analysis
The ultimate data analysis with Rust course.
sridhar0605/scientific-visualization-book
An open access book on scientific visualization using python and matplotlib
sridhar0605/sridhar0605
GitHub Profile
sridhar0605/sridhar0605.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
sridhar0605/staticrypt
Password protect a static HTML page
sridhar0605/test_porting_r
testing
sridhar0605/VennDetail
VennDetail: a bioconductor package for VennDiagram visualization and details extraction
sridhar0605/zgtf
gtf conversion utlity