Pinned Repositories
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
brc-parser
bam-readcount parser
hpackedbubble
Create Split Packed Bubble Charts
kraken-review
🦑 Visualize phylogenetic trees from the taxonomic sequence classifier: Kraken
mxnet
Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more
Qiime16sTutorial
A tutorial on up-to-date methods of 16S analysis with QIIME
seurat_docker
docker image seurat
SPLICE-q
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
training-collection
Collection of bioinformatics training materials
sridhar0605's Repositories
sridhar0605/hpackedbubble
Create Split Packed Bubble Charts
sridhar0605/seurat_docker
docker image seurat
sridhar0605/altair
Declarative statistical visualization library for Python
sridhar0605/awesome-bioinformatics-benchmarks
A curated list of bioinformatics bench-marking papers and resources.
sridhar0605/awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
sridhar0605/bayestestR
:ghost: Utilities for analyzing Bayesian models and posterior distributions
sridhar0605/brie
BRIE: Bayesian Regression for Isoform Estimate
sridhar0605/cnvkit
Copy number variant detection from targeted DNA sequencing
sridhar0605/cnvkit_docker
docker image for latest cnvkit version 0.9.7b1
sridhar0605/dad-jokes
dad jokes
sridhar0605/datasist
Datasist abstract numerous techniques and functions used repeatedly in Data Science and Machine Learning.
sridhar0605/Deep-learning-for-clustering-in-bioinformatics
Deep Learning-based Clustering Approaches for Bioinformatics
sridhar0605/DGE_workshop
sridhar0605/docker-cnvkit
sridhar0605/Intro-to-rnaseq-hpc-salmon
sridhar0605/logomaker
Software for the visualization of sequence-function relationships
sridhar0605/maser
Mapping Alternative Splicing Events to pRoteins
sridhar0605/ncls
The Nested Containment List for Python. Basically an immutable interval-tree that is silly fast for both construction and lookups.
sridhar0605/ngs-course
Practice material for NGS and UNIX course.
sridhar0605/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
sridhar0605/r-shiny-electron
WIP: Electron and R shiny
sridhar0605/random_scripts
sridhar0605/rmats_docker
docker image rmats_turbo
sridhar0605/sql.js
SQLite compiled to JavaScript through Emscripten
sridhar0605/streamlit
Streamlit — The fastest way to build custom ML tools
sridhar0605/superintronic
A tidy interface for coverage analysis
sridhar0605/tidyquery
Query R data frames with SQL
sridhar0605/vega-lite
A concise grammar of interactive graphics, built on Vega.
sridhar0605/waffle
:maple_leaf: Make waffle (square pie) charts in R
sridhar0605/wiggleplotr
A small R package to make sequencing read coverage plots in R.