Pinned Repositories
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
brc-parser
bam-readcount parser
hpackedbubble
Create Split Packed Bubble Charts
kraken-review
🦑 Visualize phylogenetic trees from the taxonomic sequence classifier: Kraken
mxnet
Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more
Qiime16sTutorial
A tutorial on up-to-date methods of 16S analysis with QIIME
seurat_docker
docker image seurat
SPLICE-q
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
training-collection
Collection of bioinformatics training materials
sridhar0605's Repositories
sridhar0605/rnaseq_docker
rna_seq_docker image
sridhar0605/svgbob
Convert your ascii diagram scribbles into happy little SVG
sridhar0605/samplot
Plot structural variant signals from many BAMs and CRAMs
sridhar0605/Python-Automation-Cookbook
Python Automation Cookbook, published by Packt
sridhar0605/Single-cell-RNA-seq-data-analysis-2018
Event page: https://www.csc.fi/web/training/-/single-cell-rnaseq-r-2018
sridhar0605/g2
G2 (The Grammar of Graphics)
sridhar0605/PathwaySplice
PathwaySplice: Pathway analysis for alternative splicing in RNA-seq datasets that accounts for different number of gene features
sridhar0605/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
sridhar0605/developing_mouse_retina_scRNASeq
10x single cell RNA-seq data from the developing mouse retina
sridhar0605/briekit
Preprocessing tool kit of BRIE project in splicing analysis
sridhar0605/Python-programming-exercises
100+ Python challenging programming exercises
sridhar0605/edgePy
A Python implementation of edgeR for differential expression analysis.
sridhar0605/pyflow-ChIPseq
a snakemake pipeline to process ChIP-seq files from GEO or in-house
sridhar0605/applied-computational-genomics
Applied Computational Genomics Course at UU: Spring 2018
sridhar0605/zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
sridhar0605/snakepipes
Snakemake workflows and wrappers for NGS data processing
sridhar0605/guideseq
Analysis pipeline for the GUIDE-seq assay. For news, see:
sridhar0605/Complete-Python-3-Bootcamp
Course Files for Complete Python 3 Bootcamp Course on Udemy
sridhar0605/Data-Structures-using-Python
This is my repository for Data Structures using Python
sridhar0605/r_docker
docker image R
sridhar0605/IGV-snapshot-automator
Script to automatically create and run IGV snapshot batchscripts
sridhar0605/crispr_docker
docker_image_crispr
sridhar0605/UMI-tools
Tools for handling Unique Molecular Identifiers in NGS data sets
sridhar0605/BarCrawler
easy to use QC package for 10X genomics barcoded reads
sridhar0605/widscharlottesville
sridhar0605/markdown-here
Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.
sridhar0605/docker-genomic-analysis
Basic docker image for ad-hoc genomic analyses
sridhar0605/GitSavvy
Full git and GitHub integration with Sublime Text 3.
sridhar0605/kraken-review
🦑 Visualize phylogenetic trees from the taxonomic sequence classifier: Kraken
sridhar0605/python-vimrc
VIM Configuration for Python / Cython / C Development