Pinned Repositories
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
brc-parser
bam-readcount parser
hpackedbubble
Create Split Packed Bubble Charts
kraken-review
🦑 Visualize phylogenetic trees from the taxonomic sequence classifier: Kraken
mxnet
Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more
Qiime16sTutorial
A tutorial on up-to-date methods of 16S analysis with QIIME
seurat_docker
docker image seurat
SPLICE-q
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
training-collection
Collection of bioinformatics training materials
sridhar0605's Repositories
sridhar0605/alarmpi
This is the latest version of the alarm clock for Raspberry Pi project.
sridhar0605/annotables
R data package for annotating/converting Gene IDs
sridhar0605/BioconductorOnContainers
Workshop for Bioc2019 for using Bioconductor on containers
sridhar0605/Bioinformatics-1
Code snippets
sridhar0605/broad_wdl
Testing cromwell_wdl from broad
sridhar0605/cgpBigWig
BigWig manpulation tools using libBigWig and htslib
sridhar0605/chromoseq
Chromoseq WGS analysis
sridhar0605/cookiecutter
A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.
sridhar0605/debrowser
Differential Count Data Analysis Toolbox
sridhar0605/docker-bsseq-r
docker image for doing bsseq analysis in R
sridhar0605/docker-rnaseq
A fat docker image for running RnaSeq
sridhar0605/docker-star
Docker container for the star aligner
sridhar0605/freeCodeCamp
The https://www.freeCodeCamp.org open source codebase and curriculum. Learn to code for free together with millions of people.
sridhar0605/genomepy
Download genomes the easy way.
sridhar0605/ggalt
:earth_americas: Extra Coordinate Systems, Geoms, Statistical Transformations & Scales for 'ggplot2'
sridhar0605/handson-ml
A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in python using Scikit-Learn and TensorFlow.
sridhar0605/infercnv
Inferring CNV from Single-Cell RNA-Seq
sridhar0605/IntEREst
IntEREst: Intron Exon Retention Estimator
sridhar0605/learn-fullstack-javascript
For help, ask in #questions at jscomplete.com/help
sridhar0605/og-aws
📙 Amazon Web Services — a practical guide
sridhar0605/oneliners
Useful bash one-liners for bioinformatics.
sridhar0605/probabilistic-programming
Experimenting with and teaching probabilistic programming
sridhar0605/pyranges
(beta) Performant Pythonic GenomicRanges
sridhar0605/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
sridhar0605/rock
:guitar: Rocking R at UMCCR
sridhar0605/sctransform
ChristophH/sctransform
sridhar0605/svaba
Structural variation and indel detection by local assembly
sridhar0605/svviz
Read visualizer for structural variants
sridhar0605/ThousandVariantCallersRepo
Thousand Variant Callers Project Repository
sridhar0605/workflows
Community maintained workflows & tools (with examples)