Pinned Repositories
bioinformatics
:microscope: Path to a free self-taught education in Bioinformatics!
brc-parser
bam-readcount parser
hpackedbubble
Create Split Packed Bubble Charts
kraken-review
🦑 Visualize phylogenetic trees from the taxonomic sequence classifier: Kraken
mxnet
Lightweight, Portable, Flexible Distributed/Mobile Deep Learning with Dynamic, Mutation-aware Dataflow Dep Scheduler; for Python, R, Julia, Scala, Go, Javascript and more
Qiime16sTutorial
A tutorial on up-to-date methods of 16S analysis with QIIME
seurat_docker
docker image seurat
SPLICE-q
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
training-collection
Collection of bioinformatics training materials
sridhar0605's Repositories
sridhar0605/Qiime16sTutorial
A tutorial on up-to-date methods of 16S analysis with QIIME
sridhar0605/ASE_bamreadcount
Allele Specific Expression using bam-readcount
sridhar0605/bcl2fastq
sridhar0605/bioinf-python
Python for Bioinformatics
sridhar0605/bioinformatics-algorithms-coursera
Solutions to Programming Assignments for Bioinformatics Algorithms (Part 1) on Coursera.org
sridhar0605/bioinformatics-hacks
A collection of Python scripts I use for random bioinformatics-related tasks.
sridhar0605/CrispRVariants
sridhar0605/devnotes
Vince Buffalo's devnotes — ½ TIL, ½ notebook
sridhar0605/fastqc
csf fork of fastqc for usage on selected reads of unaligned bam file
sridhar0605/IndyPy-Jupyter
GitHub repo for the IndyPy Jupyter presentation given on 3/8/2016 - Indianapolis, IN.
sridhar0605/polyG_calling
A set of python scripts that call lengths of G/C homopolymers in aligned illumina reads. Takes a bamfile with aligned reads and custom format list of homopolymer regions as input.
sridhar0605/sra-gtex
Some code I'm messing with