stroehleina

stroehleina's Stars

• pypa/hatch

  Modern, extensible Python project management

  Language:Python6k49758303

• elastic/elasticsearch-py

  Official Python client for Elasticsearch

  Language:Python4.2k4091.1k1.2k

• Textualize/trogon

  Easily turn your Click CLI into a powerful terminal application

  Language:Python2.5k205756

• ThinkR-open/golem

  A Framework for Building Robust Shiny Apps

  Language:R90823635132

• ewenme/ghibli

  Studio Ghibli colour palettes

  Language:R4187318

• gtonkinhill/panaroo

  An updated pipeline for pangenome investigation

  Language:Python2641226933

• mbhall88/rasusa

  Randomly subsample sequencing reads or alignments

  Language:Rust20663917

• shenwei356/kmcp

  Accurate metagenomic profiling && Fast large-scale sequence/genome searching

  Language:Go18064613

• linzhi2013/MitoZ

  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

  Language:Shell1141221939

• oschwengers/platon

  Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.

  Language:Python10964215

• hasindu2008/slow5tools

  Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.

  Language:C948456

• bede/hostile

  Precise host read removal

  Language:Python743435

• Bioinformatics-Research-Network/skill-assessments

  Training requirements for joining projects

  7040170

• fmalmeida/MpGAP

  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

  Language:Nextflow5644310

• gbouras13/plassembler

  Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates

  Language:Python501183

• Lagkouvardos/Rhea

  A set of R scripts for the analysis of microbial profiles

  Language:R4081514

• GATB/dsk

  k-mer counting software

  Language:Shell389189

• bvalot/pyMLST

  whole genome MLST analysis

  Language:Python362265

• eclarke/swga

  Select primer sets for selective whole genome amplification (SWGA)

  Language:C++33115313

• UMCUGenetics/NextflowModules

  UMCU Genetics Nextflow modules

  Language:Nextflow2511610

• CDCgov/tostadas

  🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

  Language:Python245996

• quadram-institute-bioscience/dadaist2

  Dadaist2 🟨 Highway to R

  Language:HTML133205

• songlab-cal/swga2

  Language:Python112182

• CDCgov/SanitizeMe

  Remove host contaminants from sequencing files

  Language:Python9724

• linzhi2013/taxonomy_ranks

  To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)

  Language:Python9215

• CVUA-RRW/FooDMe

  A reproducible and scalable snakemake workflow for the analysis of DNA metabarcoding experiments, with a special focus on food and feed samples.

  Language:Python42321

• adipi71/EOHsender

  Language:Java1

• JulianMohr/ncbitaxonomy

  Standalone version of ncbi_taxonomy module from ETE3

  Language:Python1000

• karinlag/abricate-extract

  Small python script to extract genes from abricate runs.

  Language:Python10

• marchoeppner/nf-configs

  Centrally managed configuration profiles for various pipelines

  1202