svm-zhang/AGOUTI

Issues

• 845 - ERROR - AGOUTI_GFF PROGRESS - Found zero genes

  #18 opened 4 years ago by mars1198
  2

• No joining-pairs found

  #20 opened 4 years ago by LemoAlex
  6

• A transposon issue

  #14 opened 4 years ago by andreyurch
  0

• No joining pairs found

  #19 opened 5 years ago by darencard
  3

• agouti scaffold fails with error: local variable 'curIndex' referenced before assignment

  #17 opened 6 years ago by gdczoller
  4

• Error while Denoising joining pairs

  #16 opened 6 years ago by Arkhaan
  1

• Multiple bugs encountered

  #15 opened 7 years ago by pliang64
  2

• support of multiple bam files?

  #9 opened 7 years ago by scotty323
  11

• KeyError when scaffold ID contains additional '_'

  #13 opened 7 years ago by andreyurch
  18

• Wrong decription

  #12 opened 8 years ago by andreyurch
  2

• zero joining-pairs when reading coordiante-sorted BAMs

  #11 opened 8 years ago by svm-zhang
  0

• Empty line in the GFF crashes AGOUTI

  #10 opened 8 years ago by svm-zhang
  1

• Question regarding recommended contig lengths

  #8 opened 8 years ago by darencard
  3

• Error while recovering original scaffolding

  #7 opened 8 years ago by bananenbongo
  14

• Issue in get_attributes module in agouti_shred.py

  #6 opened 8 years ago by bananenbongo
  4

• Recover_untouched_sequences ValueError

  #5 opened 8 years ago by aihardin
  3

• 'gap' feature request

  #3 opened 9 years ago by TakashiKoyama
  7

• Start index must be 1 or larger; GFF is 1-based

  #2 opened 9 years ago by TakashiKoyama
  13