tahashmi

tahashmi's Stars

• dabeaz-course/practical-python

  Practical Python Programming (course by @dabeaz)

  Language:Python10k342816.6k

• simd-everywhere/simde

  Implementations of SIMD instruction sets for systems which don't natively support them.

  Language:C2.5k53412259

• fastmachinelearning/hls4ml

  Machine learning on FPGAs using HLS

  Language:C++1.3k56424421

• google-research/circuit_training

  Language:Python1.3k3060199

• marbl/CHM13

  The complete sequence of a human genome

  928689499

• lnis-uofu/OpenFPGA

  An Open-source FPGA IP Generator

  Language:Verilog85543448163

• sslotin/amh-code

  Complete implementations from "Algorithms for Modern Hardware"

  Language:Jupyter Notebook70126144

• hpcc-systems/HPCC-Platform

  HPCC Systems (High Performance Computing Cluster) is an open source, massive parallel-processing computing platform for big data processing and analytics.

  Language:C++580760304

• skovaka/UNCALLED

  Raw nanopore signal mapper that enables real-time targeted sequencing

  Language:C++522135745

• nanoporetech/bonito

  A PyTorch Basecaller for Oxford Nanopore Reads

  Language:Python40134342122

• arpcard/rgi

  Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.

  Language:Python3412024878

• fastmachinelearning/hls4ml-tutorial

  Tutorial notebooks for hls4ml

  Language:Jupyter Notebook3101836139

• chanzuckerberg/shasta

  [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads

  Language:C++2722310659

• efabless/caravel_user_project

  https://caravel-user-project.readthedocs.io

  Language:Verilog18630186332

• sirselim/jetson_nanopore_sequencing

  A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.

  10792511

• human-pangenomics/hpp_pangenome_resources

  1013183

• nanoporetech/flappie

  Flip-flop basecaller for Oxford Nanopore reads

  Language:C99343715

• hasindu2008/slow5tools

  Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.

  Language:C988486

• czbiohub-sf/learn-bioinformatics

  List of resources for learning bioinformatics, from beginner to advanced

  Language:Jupyter Notebook966027

• human-pangenomics/hpgp-data

  Data from the Human PanGenomics Project

  6010124

• haowenz/sigmap

  A streaming method for mapping nanopore raw signals

  Language:C++311148

• mattloose/RUscripts

  Scripts for implementing read until and other examples.

  Language:Python311038

• Shao-Group/lecture-notes-for-algorithms

  Language:TeX30302

• EIHealth-Lab/fast-bonito

  Language:Python25446

• schatzlab/appliedgenomics2019

  Materials for Spring 2019 Applied Genomics Course

  211008

• fmfi-compbio/coral-basecaller

  Language:Python13911

• zic12345/SR2019

  Language:Python124

• fdasilva59/DeepNano

  This project contains a set of scripts to facilitate the setup of the Jetson Nano for doing Deep Learning with Tensorflow 2.0 (and also with Coral TPU Edge)

  Language:Jupyter Notebook11204

• tpesout/genomics_scripts

  A repository for scripts to do analysis of genomic data

  Language:Python7101

• AbeelLab/integrated_bioinformatics

  5211