tahashmi

tahashmi's Stars

• ArduPilot/ardupilot

  ArduPlane, ArduCopter, ArduRover, ArduSub source

  Language:C++11.3k6677.1k17.8k

• learning-zone/website-templates

  150+ HTML5 Website Templates

  Language:JavaScript5.2k81193.6k

• aolofsson/awesome-opensource-hardware

  List of awesome open source hardware tools, generators, and reusable designs

  Language:Python1.9k7115181

• TileDB-Inc/TileDB

  The Universal Storage Engine

  Language:C++1.9k69939185

• cmdcolin/awesome-genome-visualization

  A list of interesting genome browser and genome visualization programs

  Language:TypeScript8802810112

• tanghaibao/jcvi

  Python library to facilitate genome assembly, annotation, and comparative genomics

  Language:Python77136494189

• CompEpigen/figeno

  Tool for plotting sequencing data along genomic coordinates.

  Language:Python2526228

• Xilinx/open-nic

  AMD OpenNIC Project Overview

  Language:Shell23591936

• GMOD/jbrowse-components

  Source code for JBrowse 2, a modern React-based genome browser

  Language:TypeScript211212k63

• mdozmorov/HiC_data

  A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

  17613230

• sscs-ose/sscs-ose-code-a-chip.github.io

  IEEE Solid-State Circuits Society (SSCS) Open-Source Ecosystem (OSE)

  Language:Jupyter Notebook15961093

• marbl/ModDotPlot

  Language:Python124122110

• kaist-ina/BWA-MEME

  BWA-MEME: Faster BWA-MEM2 using learned-index

  Language:C++11292814

• CostaLab/reg-gen

  Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

  Language:Python1061122430

• PopicLab/cue

  Deep learning framework for SV calling and genotyping

  Language:Jupyter Notebook10362520

• Ransaka/GMM-from-scratch

  The only guide you need to learn everything about GMM

  Language:Jupyter Notebook1002215

• Ankit-Kumar-Saini/Coursera_Deep_Learning_Specialization

  Implementation of Logistic Regression, MLP, CNN, RNN & LSTM from scratch in python. Training of deep learning models for image classification, object detection, and sequence processing (including transformers implementation) in TensorFlow.

  Language:Jupyter Notebook922560

• TileDB-Inc/TileDB-VCF

  Efficient variant-call data storage and retrieval library using the TileDB storage library.

  Language:C++91167616

• os-fpga/Raptor

  Raptor end-to-end FPGA Compiler and GUI

  Language:Verilog7176223

• HSE-LAMBDA/roerich

  :point_up: Change point detection

  Language:Python646610

• huangnengCSU/longcallR

  LongcallR is a small variant caller for single molecule long-read RNA-seq data

  Language:Rust42314

• mehrdadbakhtiari/adVNTR

  A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data

  Language:Python4245215

• stjude-rust-labs/ngs

  Command line utility for working with next-generation sequencing files.

  Language:Rust335182

• ncbench/ncbench-workflow

  Language:Python11433

• arunkpv/vsd-hdp

  Language:Verilog93

• genome-spy/segment-model-spy

  An interactive visualization tool for GATK CNV analysis. Displays modeled segments and raw read/allele counts.

  Language:JavaScript6461

• munch-group/geneinfo

  Functions using mygene to show gene summaries and gene annotation plots in Jupyter

  Language:Python4250

• TravisWheelerLab/disco

  Classifies sound bursts with machine learning.

  Language:Python4660

• gbrunette/refLinker

  Chromosome-length haplotype determination from Hi-C and external reference panels

  Language:C++3100

• jysonganan/SCclust

  Package: Segmentation and Clustering of Single Cell Sequencing Copy Number Profiles

  Language:R1101