tbepler/topaz

Issues

• Implement multi-GPU training for large datasets/tomograms

  #200 opened 19 days ago by DarnellGranberry
  0

• Avoid loading entire dataset before training

  #199 opened a month ago by DarnellGranberry
  0

• Allow for sampling micrographs/tomograms of different sizes

  #198 opened a month ago by DarnellGranberry
  0

• Topaz Train/Cross-Validation failed with AssertionError: Subprocess exited with status -9.

  #160 opened 2 months ago by PeterXTH
  1

• Missing output flag in Topaz gui to train denoise model

  #194 opened 3 months ago by sven-lange
  7

• Singulairty container should be updated to 0.2.5

  #163 opened 2 months ago by eMKiso
  0

• from topaz.utils.data.loader import load_image ModuleNotFoundError: No module named 'topaz.utils'; 'topaz' is not a package

  #168 opened 2 months ago by Casion151
  1

• MRC library version incompatible

  #171 opened 2 months ago by BastiaanMM
  5

• PyTorch confilct with NumPy

  #179 opened 2 months ago by chris-hypercag
  1

• Computing Metrics

  #183 opened 2 months ago by ojasvijain
  0

• Training a denoising model on single exposure micrographs (no frames/movies), even possible?

  #184 opened 2 months ago by DennisDannecker
  6

• "score" in the output file

  #187 opened 2 months ago by ojasvijain
  0

• Running Topaz on HPC got RuntimeError: cuDNN error: CUDNN_STATUS_EXECUTION_FAILED

  #193 opened 2 months ago by CFDavidHou
  2

• Version string rejected by cryoSPARC

  #177 opened 2 months ago by Guillawme
  2

• ModuleNotFoundError: No module named 'pkg_resources'

  #191 opened 4 months ago by deepanshusachdeva5
  0

• Radius for `topaz train`

  #189 opened 4 months ago by annwhoorma
  0

• Determining the downsampling factor & radius

  #186 opened 5 months ago by ojasvijain
  4

• Preparing training data

  #185 opened 5 months ago by ojasvijain
  2

• Running topaz denoise

  #181 opened 7 months ago by ojasvijain
  7

• Plot training metrics by default?

  #164 opened a year ago by Guillawme
  0

• RuntimeError: Could not infer dtype of numpy.int64

  #175 opened 9 months ago by rdrighetto
  3

• 0.2.5 vs 0.2.5a

  #169 opened 10 months ago by jjv5
  1

• topaz convert: when image_name is numbers like "001", one error

  #174 opened 10 months ago by IAMCHF
  2

• Topaz training error in multiprocessing data loader

  #173 opened a year ago by tbepler
  0

• Topaz filament picking

  #144 opened 2 years ago by sunny1226
  7

• topaz is not using gpu

  #165 opened a year ago by diffracteD
  7

• CudaWarning: Found no NVIDIA driver on your system. Please check that you have an NVIDIA GPU and installed a driver from http://www.nvidia.com/Download/index.aspx

  #154 opened 2 years ago by pconesa
  3

• ImportError: (...)/libmkldnn.so.0: undefined symbol: cblas_sgemm_alloc

  #152 opened 2 years ago by lucajovine
  1

• denoise training using tif format movie file

  #148 opened 2 years ago by ning-2022
  5

• How to Reproduce the Full Pretraining

  #149 opened 2 years ago by vzmath
  0

• topaz denoise crashes with RuntimeError: CUDA out of memory

  #145 opened 2 years ago by maxxrenner
  4

• Git checkout errors

  #143 opened 2 years ago by bu-bgregor
  2

• topaz 0.2.5 not available through shub, conda, or pip.

  #86 opened 2 years ago by ulloaa
  10

• Topaz DeNoise3D and array size

  #122 opened 2 years ago by schmitbp
  10

• Can denoising be applied in a particle-wise situation?

  #137 opened 2 years ago by zhaotf16
  1

• Importing particle star file to cryosparc

  #138 opened 2 years ago by sasriram
  0

• training topaz demonising model with frames collected in .eer format

  #125 opened 3 years ago by samuelhaysom
  0

• TypeError using Topaz denoise

  #119 opened 3 years ago by bencreekm
  1

• ERROR: no training particles specified.

  #113 opened 3 years ago by jianhaoc
  2

• Is this method related to the commercial software Topaz DeNoise AI

  #111 opened 3 years ago by AAAeray
  0

• particles format

  #103 opened 3 years ago by jianhaoc
  1

• Issue: particles picked by Topaz are not displayed in Relion GUI

  #102 opened 3 years ago by UHeinemeyer
  4

• Support MRC mode 12

  #97 opened 3 years ago by biochem-fan
  3

• Support for Cuda 11

  #98 opened 3 years ago by alexjnoble
  1

• A problem with denoising.

  #88 opened 3 years ago by yushuv
  0

• topaz extract should have an option to stay away from micrograph edges

  #87 opened 3 years ago by tbepler
  0

• Folder hierarchy not fully preserved for *_topazpicks.star

  #84 opened 3 years ago by zruan
  5

• Fix MRC parsing bug when dtype is int16

  #79 opened 3 years ago by tbepler
  1

• tag and release for v0.2.5

  #81 opened 3 years ago by jasonkey
  2

• Singularity with Relion integration

  #80 opened 3 years ago by Jason-vR
  1