theboocock

theboocock's Stars

• herrbischoff/awesome-macos-command-line

  Use your macOS terminal shell to do awesome things.

  29.4k75401.4k

• rtyley/bfg-repo-cleaner

  Removes large or troublesome blobs like git-filter-branch does, but faster. And written in Scala

  Language:Scala11.4k104429554

• coursera-dl/coursera-dl

  Script for downloading Coursera.org videos and naming them.

  Language:Python9.5k3266502.2k

• veltman/clmystery

  A command-line murder mystery

  5.8k75121.3k

• nextflow-io/nextflow

  A DSL for data-driven computational pipelines

  Language:Groovy2.9k883.5k676

• 0ad/0ad

  [DEPRECATED] Git mirror of the 0 A.D. SVN source code (migrated to https://gitea.wildfiregames.com on August 20th 2024)

  Language:C++2.8k1780537

• markdregan/Bayesian-Modelling-in-Python

  A python tutorial on bayesian modeling techniques (PyMC3)

  Language:Jupyter Notebook2.5k1617411

• asadoughi/stat-learning

  Notes and exercise attempts for "An Introduction to Statistical Learning"

  Language:HTML2.1k224461.6k

• 44bits/awesome-opensource-documents

  :blue_book: A curated list of awesome open source or open source licensed documents, guides, books.

  2k9513156

• bioconda/bioconda-recipes

  Conda recipes for the bioconda channel.

  Language:Shell1.7k962k3.4k

• tidymodels/broom

  Convert statistical analysis objects from R into tidy format

  Language:R1.5k52713303

• tidyverse/purrr

  A functional programming toolkit for R

  Language:R1.3k63780278

• wilkelab/cowplot

  cowplot: Streamlined Plot Theme and Plot Annotations for ggplot2

  Language:R7162717484

• bulik/ldsc

  LD Score Regression (LDSC)

  Language:Python68828428349

• altdesktop/i3-style

  🎨 Make your i3 config a little more stylish.

  Language:Rust676161928

• jtleek/reviews

  Writing reviews of academic papers

  488363105

• dzerbino/velvet

  Short read de novo assembler using de Bruijn graphs, as published in: D.R. Zerbino and E. Birney. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Research, 18: 821-829

  Language:C2862937101

• slowkow/picardmetrics

  :vertical_traffic_light: Run Picard on BAM files and collate 90 metrics into one file.

  Language:Shell416107

• jmonlong/PopSV

  Population-based detection of structural variation from High-Throughput Sequencing.

  Language:R318125

• rgcgithub/clamms

  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.

  Language:C2962710

• ALLBio/allbiotc2

  Benchmark pipeline for Structural Variation analyses, funded by the ALLBio.

  Language:Python2412812

• ryanlayer/ssshtest

  Stupid Simple (ba)Sh Testing - A functional software testing framwork

  Language:Shell23503

• MerrimanLab/LDCalculator

  Shiny Interface for the calculation of Linkage Disequilibrium.

  Language:R8602

• TomKellyGenetics/vioplotx

  A development version of the vioplot R package. This has been migrated to "vioplot" as version 0.3.

  Language:R4221

• murraycadzow/R_tutorials

  A collection of tutorials for using R

  Language:HTML3505

• theboocock/NGaDNAP

  Next Generation ancient DNA Pipeline

  Language:Python3201

• hoangtn/SRBreak

  Language:Jupyter Notebook2213

• ryanlayer/vcfanno

  annotate a VCF with other VCFs/BEDs/tabixed files

  Language:Go120

• theboocock/cv

  Curriculum Vitae

  Language:TeX1100

• theboocock/PSEQC

  Resequencing QC Pipeline.

  Language:Python1101