timkartar

timkartar's Stars

• huggingface/transformers

  🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

  Language:Python134k1.1k16k26.8k

• adam-p/markdown-here

  Google Chrome, Firefox, and Thunderbird extension that lets you write email in Markdown and render it before sending.

  Language:JavaScript59.6k1k62211.3k

• badges/shields

  Concise, consistent, and legible badges in SVG and raster format

  Language:JavaScript23.7k1192.6k5.5k

• dmlc/dgl

  Python package built to ease deep learning on graph, on top of existing DL frameworks.

  Language:Python13.5k1752.8k3k

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.7k2268592.3k

• chrxh/alien

  ALIEN is a CUDA-powered artificial life simulation program.

  Language:C++4.9k5476154

• jorisschellekens/borb

  borb is a library for reading, creating and manipulating PDF files in python.

  Language:Python3.4k34196147

• google-deepmind/jraph

  A Graph Neural Network Library in Jax

  Language:Python1.4k393889

• lucidrains/perceiver-pytorch

  Implementation of Perceiver, General Perception with Iterative Attention, in Pytorch

  Language:Python1.1k3159134

• e3nn/e3nn

  A modular framework for neural networks with Euclidean symmetry

  Language:Python96120153144

• evo-design/evo

  Biological foundation modeling from molecular to genome scale

  Language:Jupyter Notebook9471751113

• jayparks/transformer

  A Pytorch Implementation of "Attention is All You Need" and "Weighted Transformer Network for Machine Translation"

  Language:Python547717122

• HannesStark/EquiBind

  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein

  Language:Python479866107

• Urinx/alphafold_pytorch

  An implementation of the DeepMind's AlphaFold based on PyTorch for research

  Language:Python391143192

• microsoft/ptgnn

  A PyTorch Graph Neural Network Library

  Language:Python37212640

• mkusner/grammarVAE

  Code for the "Grammar Variational Autoencoder" https://arxiv.org/abs/1703.01925

  Language:Python270143178

• lucidrains/protein-bert-pytorch

  Implementation of ProteinBERT in Pytorch

  Language:Python1508322

• aksub99/molecular-vae

  Pytorch implementation of the paper "Automatic Chemical Design Using a Data-Driven Continuous Representation of Molecules"

  Language:Jupyter Notebook595314

• timkartar/DeepPBS

  Geometric deep learning of protein–DNA binding specificity

  Language:Python455135

• marcellszi/rna3db

  A dataset for training and benchmarking deep learning models for RNA structure prediction

  Language:Python41396

• mhasan49/package-manager

  Installer script tailored for Debian/Ubuntu systems to installs necessary packages.

  Language:Shell39202

• asntech/pyjaspar

  pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs

  Language:Python22332

• NSchertler/StreamingNormalOrientation

  Language:C++21303

• lxuechen/ml-swissknife

  An ML research codebase built with friends :)

  Language:Jupyter Notebook20333

• KrishnaswamyLab/GSAE

  Code from 'Uncovering the Folding Landscape of RNA Secondary Structure with Deep Graph Embeddings"

  Language:Jupyter Notebook8802

• RNA-Puzzles/standardized_dataset

  Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/archive/master.zip

  Language:Shell5201

• jlwetzel-slab/rCLAMPS

  Language:Python31

• timkartar/RNAscape

  Geometry faithful 2D RNA visualization

  Language:Python2100

• banskt/dotboot

  Language:Python1

• iisuslik43/grammar-vae

  A PyTorch implementation of the Grammar Variational Autoencoder.

  Language:Python1