tonypanx's Stars
bowang-lab/scGPT
kassambara/survminer
Survival Analysis and Visualization
therneau/survival
Survival package for R
BioinformaticsFMRP/TCGAbiolinks
TCGAbiolinks
saezlab/liana
LIANA: a LIgand-receptor ANalysis frAmework
igrabski/sc-SHC
Significance analysis for clustering single-cell RNA-sequencing data
carmonalab/STACAS
R package for semi-supervised single-cell data integration
nitzanlab/biolord
Teichlab/Genes2Genes
Aligning gene expression trajectories of single-cell reference and query systems
KlugerLab/GeneTrajectory
R implementation of GeneTrajectory
gregbellan/Stabl
suinleelab/contrastiveVI
xiaoyeye/TFvelo
kunwang34/PhyloVelo
PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
YosefLab/velovi
kevinblighe/RegParallel
Standard regression functions in R enabled for parallel processing over large data-frames.
yutongo/TIGON
WanluLiuLab/scAtlasVAE
Roy-lab/scMTNI
bioinfo-biols/SEVtras
sEV-containing droplet identification in scRNA-seq data (SEVtras)
rongstat/SMAI
Alignability testing and integration of single-cell data
PoolLab/ReferenceEnhancer
immunogenomics/GeNA
Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell datasets
stephenslab/seurat-wrappers
Community-provided extensions to Seurat