tonypanx

tonypanx's Stars

• kevinblighe/RegParallel

  Standard regression functions in R enabled for parallel processing over large data-frames.

  Language:R3812

• WanluLiuLab/scAtlasVAE

  Language:Python305

• immunogenomics/GeNA

  Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell datasets

  Language:Jupyter Notebook121

• Teichlab/Genes2Genes

  Aligning gene expression trajectories of single-cell reference and query systems

  Language:Jupyter Notebook608

• kassambara/survminer

  Survival Analysis and Visualization

  Language:R525168

• therneau/survival

  Survival package for R

  Language:R400106

• BioinformaticsFMRP/TCGAbiolinks

  TCGAbiolinks

  Language:R309116

• KlugerLab/GeneTrajectory

  R implementation of GeneTrajectory

  Language:R5610

• rongstat/SMAI

  Alignability testing and integration of single-cell data

  Language:R213

• nitzanlab/biolord

  Language:Python765

• saezlab/liana

  LIANA: a LIgand-receptor ANalysis frAmework

  Language:R19632

• yutongo/TIGON

  Language:Jupyter Notebook366

• gregbellan/Stabl

  Language:Jupyter Notebook5517

• bioinfo-biols/SEVtras

  sEV-containing droplet identification in scRNA-seq data (SEVtras)

  Language:Python247

• stephenslab/seurat-wrappers

  Community-provided extensions to Seurat

  Language:R1

• PoolLab/ReferenceEnhancer

  Language:R205

• YosefLab/velovi

  Language:Python397

• kunwang34/PhyloVelo

  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells

  Language:Python434

• igrabski/sc-SHC

  Significance analysis for clustering single-cell RNA-sequencing data

  Language:HTML11313

• xiaoyeye/TFvelo

  Language:Jupyter Notebook446

• suinleelab/contrastiveVI

  Language:Python531

• Roy-lab/scMTNI

  Language:C254

• carmonalab/STACAS

  R package for semi-supervised single-cell data integration

  Language:R799

• bowang-lab/scGPT

  Language:Jupyter Notebook1.2k241