tonypanx's Stars
kevinblighe/RegParallel
Standard regression functions in R enabled for parallel processing over large data-frames.
WanluLiuLab/scAtlasVAE
immunogenomics/GeNA
Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell datasets
Teichlab/Genes2Genes
Aligning gene expression trajectories of single-cell reference and query systems
kassambara/survminer
Survival Analysis and Visualization
therneau/survival
Survival package for R
BioinformaticsFMRP/TCGAbiolinks
TCGAbiolinks
KlugerLab/GeneTrajectory
R implementation of GeneTrajectory
rongstat/SMAI
Alignability testing and integration of single-cell data
nitzanlab/biolord
saezlab/liana
LIANA: a LIgand-receptor ANalysis frAmework
yutongo/TIGON
gregbellan/Stabl
bioinfo-biols/SEVtras
sEV-containing droplet identification in scRNA-seq data (SEVtras)
stephenslab/seurat-wrappers
Community-provided extensions to Seurat
PoolLab/ReferenceEnhancer
YosefLab/velovi
kunwang34/PhyloVelo
PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
igrabski/sc-SHC
Significance analysis for clustering single-cell RNA-sequencing data
xiaoyeye/TFvelo
suinleelab/contrastiveVI
Roy-lab/scMTNI
carmonalab/STACAS
R package for semi-supervised single-cell data integration
bowang-lab/scGPT