pathway-enrichment-analysis
There are 29 repositories under pathway-enrichment-analysis topic.
broadinstitute/ssGSEA2.0
Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
egeulgen/pathfindR
pathfindR: Enrichment Analysis Utilizing Active Subnetworks
rcastelo/GSVA
Gene set variation analysis
JEFworks/liger
Lightweight Iterative Gene set Enrichment in R
saezlab/CARNIVAL
CAusal Reasoning for Network Identification with integer VALue programming in R
sigven/oncoEnrichR
Cancer-dedicated gene set interpretation
hamidghaedi/Enrichment-Analysis
From RNA-seq raw reads to enriched pathways by DEGs
dvklopfenstein/ReactomePy
Explore biomolecular pathways in Reactome from the command-line or a Python script
pathwayforte/pathway-forte
A Python package for benchmarking pathway database with functional enrichment and classification methods
cwieder/py-ssPA
Single sample pathway analysis tools for omics data
AberystwythSystemsBiology/pyMEAN
A Python package for metabolite enrichment analysis.
biomedbigdata/keypathwayminer-R
R package for de novo pathway enrichment using KeyPathwayMiner
Greco-Lab/FunMappOne
FunMappOne: a tool to summarize and visually navigate functional categories in multiple experiments.
hancockinformatics/pathlinkR
Analysis and visualization of RNA-Seq results
viktormiok/TempOseq_CarcinoChemMCF-7
Cellular signatures characterisation after carcinogenic chemical exposure in mammalian tissue.
akatrib/sys-bio
Curated list of analysis pipelines for biological & clinical interpretation of data-driven findings
wikipathways/summit2018
WikiPathways Summit Planning
yotammarton/bioinformatics_course
GWAS of Postmortem Brain Samples Sheds Light on the Development of Schizophrenia and Bipolar Disorder
c-lonergan/nmf_gsea
Thesis: Identifying significantly enriched gene sets with NMF-derived metagenes and their difference vectors
hagax8/PathAnalyzor
Just another wrapper for pathway analysis using MAGMA
manojk-imtech/viralrep
Python and R programs used in the identification of repurposed drugs against viruses responsible for causing epidemics/pandemics
MolecularPathologyLab/SubtypeExploreR
Web application that enables users to compare the expression of genes or enrichment of gene sets between different molecular subtypes of colorectal cancer
noobCoding/CellEnrich
Pathway enrichment analysis / visualize for Single Cell Data
dastagiri7/Bioinformatics
Neuronal genes mutation interactions and analysis
KrajShuffle/Persister-Single-Cell-RNA-Seq-Data-Analysis
Single Cell RNA-seq analysis of Persister Cells to unearth key stress pathways and core, differential genes of those respective pathways
RackS103/Omics_Analysis_Scripts
A compilation of functions and scripts I've created to streamline analysis of phosphoproteomic data in Python!
rx32940/Norovirus_RNA_Seq
This repo contains code to pre-process, quant, and analyze RNA-Seq data obtained from human enteriod cell cultures
hallamlab/chap
CHAP: Modeling Metabolic Pathways as Groups (with Augmentation)
raevskymichail/SIA_analysis
This repository contains primary source code for "Transcriptomic portraits and molecular pathway activation features of spinal intramedullary astrocytomas" manuscript.