salmon
There are 75 repositories under salmon topic.
COMBINE-lab/salmon
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
hyunhwan-jeong/SalmonTE
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
mastodon/ostatus2
A Ruby toolset for interacting with the OStatus suite of protocols
Novartis/pisces
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
thelovelab/fishpond
Differential expression and allelic analysis, nonparametric statistics
yyoshiaki/ikra
RNAseq pipeline centered on Salmon
OStatus/spec
OStatus Specification
pfefferle/wordpress-salmon
A salmon plugin for WordPress
iamcal/homespring.js
A JavaScript interpreter for Homespring
nwfsc-cb/rCAX
rCAX R package: an R client to access the REST API for the StreamNet Coordinated Assessments tables
SoniaRuiz/coexp-website
CoExp website is a web-based tool developed in .NET Core Framework, for querying 109 independent gene co-expression networks from the family of CoExp R packages.
dapperstats/salvage
Code for smooth interactions with the salvage database
asendia/salmonfit
Frontend code of salmonfit.com
InfiniteTeam/SalmonBot
연어봇 - SalmonBot
ORE-DiaPFC/Abondance
Mise à jour et standardisation des séries chronologiques d'abondance du saumon atlantique sur les cours d'eau de l'ORE DiaPFC
bissessk/RNA-seq-Analysis-of-Control-and-NRDE2-depleted-Breast-Cancer-Cells
Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.
boehmv/SMG5-SMG7
Code and scripts for the RNA-seq analysis of project: SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity
boehmv/UPF3
Code and scripts for the RNA-seq analysis of project: Deciphering the cellular roles and dissecting functional regions of UPF3A and UPF3B in human NMD
mdscheuerell/AukeCoho
Development site for an integrated population model for Auke Creek coho salmon
mku11/Salmon-Vault
Secure all your personal files in Salmon Vault with AES-256 encryption for your Android, Windows, Linux, MacOS devices. Powered by Salmon AES CTR library.
nwfsc-math-bio/VRData
Spawner and fraction wild data for the NWFSC Status Reviews.
sk7-dotcom/Evaluating_RNAseq_aligners
Evaluating HISAT2, Salmon and Kallisto alignment using Checkpoint Blockade treated CT26 Experimental Data
srp33/ExpressionAble
Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.
srp33/ExpressionAble-CLI
Transform, query, and merge tabular files with the expressionable command-line tool. This tool is used primarily for gene-expression data.
tdayris-perso/rna-dge-salmon-deseq2
Perform differential analysis from FastQ files with Salmon, tximport, and DESeq2
yejg2017/Sequence-Mapping-Bio
This is a code tutorial for rna or dna sequence mapping by myself-RyanYip
fionacarson/salmon_density_dashboard
Density of juvenile salmon in Caithness rivers - R-shiny dashboard
gusg21/distributed-project
an unfinished game I worked on for my Distributed Computing class in high school
int-salmon-data-lab/statusAndTrends
Datasets and related knowledge from the IYS Salmon Status and Trends workshops
jianhong/genomictools
docker file for genomic tools
nwfsc-math-bio/NWCTrends
This is an R package that runs the standardized trends metrics used in the 5-year Viability Reports for listed PNW salmonids.
salish-sea/orca-salmon
A dashboard visualizing Chinook salmon returns to the Fraser and Columbia Rivers and Southern Resident killer whales occurrence
salmon-forecasting/workshop-2024
Information for a workshop on salmon forecasting sponsored by the USGS Cooperative Units Program. Participants include scientists from state and federal agencies in California, Oregon, Washington, and Idaho.
salmoncoast/Sea-lice-database
Data from a longterm sea lice monitoring in the Broughton Archipelago, British Columbia, Canada by Alexandra Morton (Raincoast Research) and the Salmon Coast Field Station (salmoncoast.org)
tdayris-perso/rna-count-salmon
Snakemake workflow for Salmon quantification and FastQC quality controls