trasse

trasse's Stars

• spreka/annotatorj

  AnnotatorJ: ImageJ plugin for object annotation in 2D

  Language:Java226

• matjesg/bioimage_analysis

  Evaluation of biological effects from microscopy images

  Language:Jupyter Notebook41

• alexandrovteam/DeepCycle

  code for DeepCycle paper

  Language:Jupyter Notebook92

• Bayer-Group/paquo

  PAthological QUpath Obsession - QuPath and Python conversations

  Language:Python10316

• trasse/MIScnn

  A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

  1

• jonathanmasci/EG16_tutorial

  Demo material for the EG16 tutorial on "Deep learning for 3D shape analysis"

  Language:Jupyter Notebook5019

• jianwen-xie/3DDescriptorNet

  Learning Descriptor Networks for 3D Shape Synthesis and Analysis

  Language:Python348

• marcomusy/vedo

  A python module for scientific analysis of 3D data based on VTK and Numpy

  Language:Python2k265

• MIC-DKFZ/batchgenerators

  A framework for data augmentation for 2D and 3D image classification and segmentation

  Language:Jupyter Notebook1.1k221

• kreshuklab/plant-seg

  A tool for cell instance aware segmentation in densely packed 3D volumetric images

  Language:Python9131

• wolny/pytorch-3dunet

  3D U-Net model for volumetric semantic segmentation written in pytorch

  Language:Jupyter Notebook2k497

• mritools/cupyimg

  CuPy implementations of image and signal processing functions from NumPy, SciPy and scikit-image

  Language:Python453

• trasse/mit-deep-learning-book-pdf

  MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

  1

• trasse/Nagao2020

  Robust Classification of Cell Cycle Phase and Biological Feature Extraction by Image-Based Deep Learning

  1

• ANTsX/ANTsPy

  A fast medical imaging analysis library in Python with algorithms for registration, segmentation, and more.

  Language:Python629161

• facebookresearch/detr

  End-to-End Object Detection with Transformers

  Language:Python13.4k2.4k

• VolkerH/PythonSnippets

  Various python snippets

  Language:Jupyter Notebook61

• AllenCellModeling/aicsimageio

  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python

  Language:Python20251

• facebookresearch/detectron2

  Detectron2 is a platform for object detection, segmentation and other visual recognition tasks.

  Language:Python30.1k7.4k

• juglab/n2v

  This is the implementation of Noise2Void training.

  Language:Python394108

• stardist/stardist

  StarDist - Object Detection with Star-convex Shapes

  Language:Python899219

• uermel/tem-tools

  Useful files and scripts for transmission EM

  1