ABRicate doesn't give results
MelonaT opened this issue · 1 comments
MelonaT commented
Hi,
ABRicate doesn't give me results for my FASTA files that I downloaded from NCBI. It doesn't show me errors but simply nothing in the results table, even though I'm sure that there should be some outcome. I tried it for several different accession numbers/FASTA files and didn't succeed. Is there any parameter I might have wrong that impedes results?
Thank you very much for your help!
Rohit-Satyam commented
Try using --minid 40 --mincov 25 or altering the thresholds in these two tags. I am using the thresholds from this paper