twaddlac

twaddlac's Stars

• huggingface/transformers

  🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

  Language:Python133k1.1k15.9k26.5k

• open-guides/og-aws

  📙 Amazon Web Services — a practical guide

  Language:Shell35.7k1.2k2273.9k

• donnemartin/data-science-ipython-notebooks

  Data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe, Keras), scikit-learn, Kaggle, big data (Spark, Hadoop MapReduce, HDFS), matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines.

  Language:Python27.3k1.6k417.8k

• matterport/Mask_RCNN

  Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow

  Language:Python24.6k5812.8k11.7k

• jupyter/jupyter

  Jupyter metapackage for installation, docs and chat

  Language:Python14.9k6244044.1k

• FavioVazquez/ds-cheatsheets

  List of Data Science Cheatsheets to rule the world

  14.5k536153.8k

• jupyter/docker-stacks

  Ready-to-run Docker images containing Jupyter applications

  Language:Python7.9k1888953k

• mamba-org/mamba

  The Fast Cross-Platform Package Manager

  Language:C++6.8k471.7k349

• Sequel-Ace/Sequel-Ace

  MySQL/MariaDB database management for macOS

  Language:Objective-C6.7k431.2k247

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k1001.3k577

• pysam-developers/pysam

  Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

  Language:Cython77647921274

• cloudposse/terraform-aws-components

  Opinionated, self-contained Terraform root modules that each solve one, specific problem

  Language:HCL4962156211

• jorvis/biocode

  Bioinformatics code libraries and scripts

  Language:Python4903159246

• mummer4/mummer

  Mummer alignment tool

  Language:C++45021200107

• ndierckx/NOVOPlasty

  NOVOPlasty - The organelle assembler and heteroplasmy caller

  Language:Perl1761423263

• aws-samples/aws-genomics-workflows

  Genomics Workflows on AWS

  Language:Shell141190108

• Cibiv/NextGenMap

  NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows analysing large scale datasets even with increased SNP rates or higher error rates (e.g. caused by specialized experimental protocols) and avoids biases caused by highly variable regions in the genome.

  Language:C++8612528

• irickman/whoop-downloader

  A set of functions to download data from WHOOP

  Language:Jupyter Notebook523311

• nygenome/taxmaps

  Ultra-efficient taxonomic mapping of NGS data

  Language:Python5121011

• nasqar/seuratv3wizard

  A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3

  Language:R3381014

• bachev/mira

  MIRA sequence assembler

  Language:C273116

• nasqar/deseq2shiny

  a web-based R shiny application that wraps DESeq2 R package

  Language:R15247

• nasqar/SeuratWizard

  This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.

  Language:R13766

• QuiNovas/terraform-aws-batch-compute-environment

  Creates a batch compute environment

  Language:HCL9335

• damidseq/RDamIDSeq

  All in R DamID sequencing pipeline

  Language:R511

• gencorefacility/nf-workflows

  Repository of NextFlow Workflows

  Language:Nextflow4201

• scrambledpie/autograd_from_scratch

  Casual for fun implementation of autograd in numpy for learning/teaching purposes

  Language:Python3

• nasqar/GeneCountMerger

  A preprocessing tool to merge gene count files

  Language:R2201

• nyuad-cgsb/chemgen

  Language:JavaScript1

• nyuad-cgsb/chemgen-docker

  Chemgen Docker Images

  Language:Python1