usegalaxy-eu/workflow-testing

add deeptools workflows?

Opened this issue · 4 comments

hexylena commented

Hey @dpryan79 would you have time/interest in getting some deepTools workflows under regular testing on useGalaxy.eu? Wouldn't be too hard, just add a directory like example1/2

dpryan79 commented

Maybe? Is this mostly to test Galaxy?

bgruening commented

This is mostly to test the deeptools workflows :)
As a benefit we also test Galaxy and our deployment. Maybe we can go with the ChIP-seq tutorial or the ATAC-seq workflow?

dpryan79 commented

Sounds more useful for testing integration between packages. What sort of time restrictions would there be on the workflows?

@bgruening Can you push out the deepTools 3.1.0 wrappers to the toolshed? That'll help facilitate me finishing an ATAC-seq workflow.

bgruening commented

What sort of time restrictions would there be on the workflows?

None. Its running on the production server, so in theory there is no time restriction and I would rather waste some CPU cycles but make sure our production workflow are functioning than restricting ourself.
Plan is to have all training-material workflows under testing at some point.

@bgruening Can you push out the deepTools 3.1.0 wrappers to the toolshed? That'll help facilitate me finishing an ATAC-seq workflow.

Ongoing, will take 30min.

Thanks!