vang42

vang42's Stars

• dokan-dev/dokany

  User mode file system library for windows with FUSE Wrapper

  Language:C5.2k212899666

• laurent22/rsync-time-backup

  Time Machine style backup with rsync.

  Language:Shell3.4k106169447

• stephenturner/oneliners

  Useful bash one-liners for bioinformatics.

  1.8k15610521

• phw198/OutlookGoogleCalendarSync

  Sync your Outlook and Google calendars

  Language:C#1.8k731.9k217

• josegonzalez/python-github-backup

  backup a github user or organization

  Language:Python1.3k31119237

• shenwei356/seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.3k28433157

• feo-cz/win-sshfs

  Fork of http://code.google.com/p/win-sshfs/

  Language:C#1.3k80177126

• shenwei356/csvtk

  A cross-platform, efficient and practical CSV/TSV toolkit in Golang

  Language:Go1k2426284

• kblin/ncbi-genome-download

  Scripts to download genomes from the NCBI FTP servers

  Language:Python94035144175

• bwa-mem2/bwa-mem2

  The next version of bwa-mem

  Language:C++7163621397

• brentp/mosdepth

  fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

  Language:Nim69122210100

• igvteam/igv

  Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

  Language:Java637481.2k384

• crazyhottommy/bioinformatics-one-liners

  Bioinformatics one liners from Ming Tang

  452190130

• cov-lineages/pangolin

  Software package for assigning SARS-CoV-2 genome sequences to global lineages.

  Language:Python42745382107

• brentp/somalier

  fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

  Language:Nim262912835

• ucscGenomeBrowser/kent

  UCSC Genome Browser source tree. Stable branch: "beta".

  Language:C218246487

• roblanf/minion_qc

  Quality control for MinION sequencing data

  Language:R211125142

• broadinstitute/ichorCNA

  Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

  Language:R1622113088

• gatk-workflows/gatk4-data-processing

  Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

  Language:wdl14815074

• lh3/bedtk

  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)

  Language:C1358115

• CCDG/Pipeline-Standardization

  Language:Python8112325

• SciLifeLab/TIDDIT

  TIDDIT - structural variant calling

  Language:Cython67184013

• YangLab/CIRCexplorer

  A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, Cell (2014), 159:134-147)

  Language:Python60121523

• Illumina/SMNCopyNumberCaller

  A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS

  Language:Python49101112

• jelastic-jps/java-memory-agent

  Java Memory Agent for Container RAM Usage Optimization

  Language:Shell39604

• Molmed/checkQC

  CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria

  Language:Python25122316

• micknudsen/gwf-utilization

  Calculate utilization of allocated resources in a gwf workflow

  Language:Python73102

• A-Farhan/cova

  Language:C420

• micknudsen/snpahoy

  ID SNP analysis for NGS sequencing

  Language:Python31121

• GenomicsNX/QMRD

  Targeted RNA-sequencing for the quantification of measurable residual disease in acute myeloid leukemia

  Language:Python1102