cov-lineages/pangolin

Issues

• How to use pangolin naming other vrius?

  #549 opened 5 months ago by AceLi12138
  1

• pangolin not outputting an expected lineage in simulation experiment

  #546 opened 6 months ago by huzuner
  6

• Pangolin installation with conda v24.1.2 is failing

  #541 opened 10 months ago by satya-lalam
  2

• Error in rule scorpio: with pangolin 4.3

  #537 opened a year ago by gadepallivs
  7

• Ambiguous_content

  #465 opened 3 years ago by antarapaul02
  9

• update https://pangolin.cog-uk.io/ ?

  #540 opened a year ago by kapsakcj
  2

• DOC: More reliable installation instructions

  #513 opened 2 years ago by corneliusroemer
  0

• new updated pangolin doesn't work

  #535 opened a year ago by yl315504
  4

• pangolin vs nextclade

  #516 opened a year ago by fancybeakers
  4

• How to stop writing to read-only home directory

  #533 opened a year ago by erinyoung
  5

• Pango Designation Hash

  #534 opened a year ago by whottel
  2

• Example output columns shifted

  #531 opened a year ago by pontushojer
  7

• faToVcf seems to omit insertions in vcf output (input to usher)

  #530 opened a year ago by smsaladi
  3

• beginning and end of reference masked?

  #529 opened a year ago by smsaladi
  2

• cov-lineages.org doesn't find B.1.617.3

  #498 opened a year ago by trilisser
  1

• Latest version not available in conda

  #528 opened a year ago by KartofellSalat
  1

• Pangolin.cog-uk.io - Not loading

  #517 opened a year ago by coreymeloche
  1

• Pangolin.cog stuck in analyzing

  #518 opened a year ago by pu1621
  6

• Pangolin Web Application will not load.

  #520 opened a year ago by s-groc
  5

• Python version conflict with Snakemake

  #525 opened a year ago by dskola
  3

• Commit version 86eb4975fc4fc8b5d92148c2e370045ae9bf9f5d

  #515 opened 2 years ago by EduardoQD
  5

• Pangolin conflict

  #508 opened 2 years ago by carlottaolivero
  1

• Python Error after Updating Pangolin

  #504 opened 2 years ago by steinbrl
  5

• Add parameter to main in command.py

  #503 opened 2 years ago by afdhalrashid
  4

• AttributeError: 'NoneType' object has no attribute 'startswith' for ambiguous sequence

  #510 opened 2 years ago by phyden
  13

• The best way to update pangolin

  #509 opened 2 years ago by afdhalrashid
  1

• Rebuild pangolin when edit some of the files

  #502 opened 2 years ago by afdhalrashid
  2

• Naming convention violates best practices in regard to not using geographical Names

  #507 opened 2 years ago by AurelWu
  1

• Pangolin v4.2 stuck on "Using UShER as inference engine."

  #500 opened 2 years ago by VinceLiAB
  12

• Snakemake issue with asyncio / python3.11

  #497 opened 2 years ago by abel-betraoui
  4

• New mutation from wastewater sample

  #493 opened 2 years ago by pratibha-kadam
  2

• Inconsistency between data_compatibility.csv and releases in Github

  #478 opened 2 years ago by pvanheus
  6

• update in tabulate leads to error when running pangolin

  #489 opened 2 years ago by abel-betraoui
  10

• Pangoline Lineage calling despite "N" at defining SNP position

  #492 opened 2 years ago by MantaRay87
  3

• "Check your environment, didn't find appropriate files from the pangoLEARN repo. Trained model must be installed, please see https://cov-lineages.org/pangolin.html for installation instructions."

  #484 opened 2 years ago by nonononanana
  6

• No New Lineages Since March

  #466 opened 3 years ago by Boruchf
  9

• BA.4* sequences identified as BA.2 by Pangolin after Scorpio override

  #482 opened 2 years ago by gyebra-phs
  4

• pangolin not assigning new recombinant lineage

  #487 opened 2 years ago by enabieva
  2

• Please merge data_compat_v1.14 branch into master

  #485 opened 2 years ago by wm75
  1

• regarding installation of pangolin

  #471 opened 2 years ago by Rashmi-12-a11y
  7

• Sequence unable to be processed with Pangolin (unknown error)

  #481 opened 2 years ago by coreymeloche
  2

• Regarding Scorpio Call Prioritisation

  #477 opened 2 years ago by msinno01
  3

• BA.2.75 sequence gets misclassified as BA.2.73

  #473 opened 3 years ago by KHajji
  9

• pangolin --all-versions broken with 4.1

  #467 opened 3 years ago by HadrienG
  15

• Web application doesn't work

  #472 opened 3 years ago by carlottaolivero
  4

• Can't install pangolin 4.1.1

  #469 opened 3 years ago by synmuh
  3

• Usher calls an unexpected high proportion of BE.1 Variants

  #470 opened 3 years ago by GorgonVZ
  2

• install pangolin

  #463 opened 3 years ago by jeansaplische
  4

• Question regarding UNASSIGNED_LINEAGE_REPORTED

  #460 opened 3 years ago by EricFournier3
  4

• another Usher error

  #459 opened 3 years ago by trilisser
  1