whottel

Pinned Repositories

Freyja
Depth-weighted De-Mixing
Language:HTML106 13 14530
pangolin
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
Language:Python430 45 385106
bigbacter-nf
Language:Nextflow20 1 43
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:JavaScript1.2k 35 1.7k606
nextclade
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
Language:Rust221 20 46461
gubbins
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Language:Python178 11 18652
Cecret
Reference-based consensus creation
Language:Nextflow51 5 21127
Grandeur
UPHL's Reference Free Pipeline
Language:Nextflow25 4 1797
Cecret
Reference-based consensus creation
Language:Nextflow00
docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:Dockerfile00

whottel's Repositories

whottel/Cecret
Reference-based consensus creation
Language:Nextflow00
whottel/docker-builds
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics
Language:Dockerfile00