vincent-noel

Researcher in the @sysbio-curie team at Institut Curie

Institut CurieSão Paulo, Brasil/Paris, France

Pinned Repositories

COVID19
Rapid prototyping coalition for SARS-CoV-2 tissue infection dynamics. (integrated model)
Language:Jupyter Notebook2 2 02
libSigNetSim
Python library designed for building, adjusting and analyzing quantitative biological models.
Language:Python30
MaBoSS-env-2.0
Language:C++0 2 00
MaBoSS_Course
Material for MaBoSS course organized by PerMedCoE
Language:Jupyter Notebook1 3 03
PhysiCell
PhysiCell: Scientist end users should use latest release! Bugfixes should be submitted to the development branch.
Language:Jupyter Notebook0 2 00
PhysiCell-Studio
GUI application to build a PhysiCell model
Language:Python1 2 00
PhysiMESS
PhysiCell MicroEnvironment Structure Simulation
Language:C++1 2 00
pyMaBoSS
python interface for the MaBoSS software
Language:Jupyter Notebook0 2 00
SigNetSim
SigNetSim : The Signaling Network Simulator. A Web application for building, fitting, and analyzing mathematical models of molecular signaling networks.
Language:Python3 3 32
WebMaBoSS
A web interface for MaBoSS modeling
Language:JavaScript1 3 03

vincent-noel's Repositories

vincent-noel/MaBoSS-Optim
Optimization of MaBoSS models
Language:C++
vincent-noel/MaBoSS-Sampling
Parameter sampling for MaBoSS models
Language:C++1
vincent-noel/IndividualTrajectoryAnalysis
Language:Jupyter Notebook
vincent-noel/sbgnviz.js
A web based visualization tool for process description maps in SBGN
Language:JavaScript
vincent-noel/cd2sbgnml
Translation between CellDesigner-flavoured SBML and SBGN-ML
Language:Java
vincent-noel/cytoscape.js
Graph theory (a.k.a. network) library for analysis and visualisation (compatible with CommonJS/Node.js/Browserify/Webpack, AMD/Require.js, npm, Bower, jspm, Meteor/Atmosphere, jQuery, and plain JS/JavaScript)
vincent-noel/NaviCellv3
Language:JavaScript
vincent-noel/PhysiCell-Jupyter-GUI
Template Jupyter notebook for PhysiCell-powered nanoHUB apps
vincent-noel/colosys_model
Language:Jupyter Notebook1
vincent-noel/project_repo_ecm_simul
Project repository for the creation of jupyter notebook for PhysiCell simulation with extra cellular matrtix
Language:C++
vincent-noel/pyExaStoLog
vincent-noel/MaBoSS_test
Language:Jupyter Notebook
vincent-noel/pc4ecm
PhysiCell Invasion Model
Language:C++1
vincent-noel/MaBoSS-Ecosystem
Material for the MaBoSS Ecosystem Tutorial
Language:Jupyter Notebook
vincent-noel/TregModelUpPMaBoSS
UpPMaBoSS of Treg cells
Language:Jupyter Notebook
vincent-noel/ColabExample
Language:Jupyter Notebook
vincent-noel/TregModel
Jupyter Notebook for Treg model
Language:Jupyter Notebook
vincent-noel/colomoto-jupyter
Language:Python
vincent-noel/UpPMaBoSS
Python library for simulation of Update Population MaBoSS models
Language:Python
vincent-noel/libSigNetSim
Python library designed for building, adjusting and analyzing quantitative biological models.
Language:Python3
vincent-noel/SigNetSim
SigNetSim : The Signaling Network Simulator. A Web application for building, fitting, and analyzing mathematical models of molecular signaling networks.
Language:Python32
vincent-noel/MaBoSS-Client
MaBoSS-Client : A python client for MaBoSS Server
Language:Python
vincent-noel/pydstool
PyDSTool main development repo
Language:Python
vincent-noel/SigNetSim-Dockers
Dockers definition for SigNetSim
Language:Shell
vincent-noel/plsa
C library for non-linear optimization, using a parallelized Lam-Delosme simulated annealing.
Language:C1
vincent-noel/sbml-test-suite
The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package.
Language:JavaScript
vincent-noel/python-libsedml
Python package for libsedml
Language:Shell1
vincent-noel/python-libnuml
Python package to install latest NuML version
Language:Shell
vincent-noel/bioservices
Access to Biological Web Services from Python.
Language:Python
vincent-noel/libSEDML
SED-ML library based on libSBML
Language:C++