vinibfranc

vinibfranc's Stars

• jakevdp/PythonDataScienceHandbook

  Python Data Science Handbook: full text in Jupyter Notebooks

  Language:Jupyter Notebook43.1k1.8k19317.9k

• CSSEGISandData/COVID-19

  Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

  29.1k8663.8k18.4k

• mongodb/mongo

  The MongoDB Database

  Language:C++26.3k1.3k05.6k

• google/deepvariant

  DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

  Language:Python3.2k156835724

• ieee8023/covid-chestxray-dataset

  We are building an open database of COVID-19 cases with chest X-ray or CT images.

  Language:Jupyter Notebook3k1551121.3k

• snakemake/snakemake

  This is the development home of the workflow management system Snakemake. For general information, see

  Language:HTML2.3k191.7k553

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.7k1554.6k591

• github/covid19-dashboard

  A site that displays up to date COVID-19 stats, powered by fastpages.

  Language:Jupyter Notebook1.6k3023.8k418

• neherlab/covid19_scenarios

  Models of COVID-19 outbreak trajectories and hospital demand

  Language:JavaScript1.4k50220353

• nextstrain/ncov

  Nextstrain build for novel coronavirus SARS-CoV-2

  Language:Python1.4k77420403

• freebayes/freebayes

  Bayesian haplotype-based genetic polymorphism discovery and genotyping.

  Language:C++78446690264

• tseemann/snippy

  :scissors: :zap: Rapid haploid variant calling and core genome alignment

  Language:Perl47430581115

• DanielHe4rt/bbbot

  Bot feito para estudos de leitura de imagem

  Language:JavaScript4251833110

• rambaut/figtree

  Automatically exported from code.google.com/p/figtree

  Language:Java39118199106

• stamatak/standard-RAxML

  Language:C3294854192

• nextstrain/augur

  Pipeline components for real-time phylodynamic analysis

  Language:Python26831693129

• NBISweden/MrBayes

  MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

  Language:C2324822379

• alsnhll/SEIR_COVID19

  SEIR model for COVID-19 infection, including different clinical trajectories of infection

  Language:HTML1942513105

• beast-dev/beast-mcmc

  Bayesian Evolutionary Analysis Sampling Trees

  Language:Java191471.1k72

• Cibiv/IQ-TREE

  Efficient phylogenomic software by maximum likelihood

  Language:C++1851823744

• stephaneguindon/phyml

  PhyML -- Phylogenetic estimation using (Maximum) Likelihood

  Language:C1762015961

• inab/trimal

  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

  Language:C++175117041

• chschoenenberger/covid19_dashboard

  This is a dashboard, similar to the one from Johns Hopkins using open source technology.

  Language:R143142265

• AliView/AliView

  Software for aligning viewing and editing dna/aminoacid sequences, intuitive, fast and lightweight. Download and website:

  Language:Java1161310624

• RamiKrispin/coronavirus_dashboard

  The Coronavirus Dashboard

  Language:R1081419133

• ddarriba/jmodeltest2

  Automatically exported from code.google.com/p/jmodeltest2

  Language:Java75134647

• raffg/covid-19

  dashboard to monitor the COVID-19 pandemic

  Language:Python503225

• beast-dev/RBeast

  R tools for posterior analyses using BEAST

  Language:R2029189

• phylogeography/SPREADv1

  Spatial Phylogenetic Reconstruction of Evolutionary Dynamics

  Language:Java201069

• perone/covid19analysis

  COVID-10 Analysis

  Language:HTML15421