stamatak/standard-RAxML

Issues

• ERROR: Sequences out of alignment

  #74 opened 9 months ago by ShanfenO
  1

• problem about the number of expected states is 20 the number of states that are present is 19.

  #73 opened a year ago by jianshu93
  1

• which version is best for me?

  #72 opened a year ago by liamxg
  3

• Misleading output in RAxML_info w/ options -f e -m GTRCAT

  #46 opened a year ago by tamuri
  3

• redundancy in genetic distance output

  #51 opened a year ago by boristim66
  1

• Estimate branch length with a fixed tree

  #52 opened a year ago by lychen83
  1

• Custom tree roots

  #53 opened a year ago by lipeng-j
  1

• Multithread and Resume - Reg.

  #55 opened a year ago by bioramg
  1

• Adding branch length and bootstraps to a consensus tree

  #59 opened a year ago by npbhavya
  3

• Why Raxml is taking too long to prepare a tree

  #63 opened a year ago by krishna1925
  1

• Can not install raxmlHPC-MPI-AVX

  #69 opened 2 years ago by 1835033964
  1

• Missing bootstrap values

  #68 opened 2 years ago by cahuparo
  1

• likelihood failed

  #67 opened 2 years ago by Lcornet
  1

• Should assemblies be removed if core gene alignment shows redundancies?

  #64 opened 2 years ago by chahatupreti
  1

• problems with memory

  #62 opened 2 years ago by pavlo888
  1

• RAxML can't, parse the alignment file as phylip file

  #61 opened 2 years ago by Jun666Yang
  2

• Can't compile RAxML on Linux (Ubuntu 20.04)

  #60 opened 3 years ago by Tomas-Pe
  1

• How to use RaXML with fasta input file.

  #58 opened 3 years ago by sekhwal
  2

• Exit code 0 thrown albeit error in ancestral state reconstruction

  #56 opened 3 years ago by jtklein
  1

• Packaging RAxML

  #54 opened 3 years ago by V-Z
  5

• Kappa calculation from RAxML output.

  #49 opened 5 years ago by maesaar
  1

• How to set the model parameter for GTR+F+I?

  #48 opened 5 years ago by liufuyan2016
  2

• how to generate a binary tree?

  #47 opened 5 years ago by haojingshao
  1

• No tree file output

  #45 opened 7 years ago by TarsLi
  2

• --flag-check gives succesful exit with unsupported option

  #44 opened 7 years ago by ChrisHIV
  1

• optimizeModel.c:123: setRateModel: Assertion `rate >= 0.0001 && rate <= 1000000.0' failed.

  #42 opened 8 years ago by idavydov
  2

• axml.h file

  #41 opened 8 years ago by giriarteS
  1

• Assertion error when using single-threaded AVX

  #39 opened 8 years ago by mbakke
  2

• epa slow and fast placement algorithms

  #37 opened 8 years ago by GuangchuangYu
  1

• Portability issues due to using reserved keywords as variable names

  #25 opened 9 years ago by hrabe
  1

• Negative time duration for bootstraps and/or total time on Windows versions

  #23 opened 9 years ago by hrabe
  2

• Missing .gitignore file to specify files intentionally not to be tracked

  #27 opened 9 years ago by hrabe
  1

• Wrong parenthesis level leads to potentially broken code

  #29 opened 9 years ago by hrabe
  1

• Core dumped when adding bipartition information to a tree

  #32 opened 9 years ago by jgerken
  4

• Write error messages to stderr rather than stdout?

  #21 opened 9 years ago by swofford
  1

• Segmentation fault error v8.1.23+ when doing partitioned analysis

  #22 opened 9 years ago by davised
  7

• Allow hypothesis testing with the SH-like test

  #19 opened 9 years ago by josephwb
  6

• different likelihoods with -f N under different scenarios and as compared to -f a

  #20 opened 9 years ago by blackrim
  3

• Bug in ancestral state reconstruction

  #18 opened 10 years ago by trvrb
  2

• link to slides at readme does not work anymore

  #14 opened 10 years ago by andrejpan
  3

• Assertion `!adef->useBinaryModelFile' failed

  #15 opened 10 years ago by fangly
  3

• add a proper license file

  #16 opened 10 years ago by wookietreiber
  0

• possible error in compiling non-pthreads version

  #12 opened 11 years ago by chinchliff
  1

• Request for providing a TAG'ed version of RAxML

  #9 opened 11 years ago by fgeorgatos
  3

• TODO: implement per-site AA model estimate

  #5 opened 11 years ago by stamatak
  1

• Perl portability with env

  #10 opened 11 years ago by gnewton
  1

• TODO: integrate auto protein models from RAxML-Light

  #7 opened 11 years ago by stamatak
  0

• MacPorts and a named release?

  #11 opened 11 years ago by MattOates
  1

• No tags in github for RAxML releases

  #8 opened 13 years ago by peterjc
  2

• checkSeed called to often in fastDNAParsimony.c

  #6 opened 13 years ago by sim82
  0