whoisleehom

whoisleehom's Stars

• yarnpkg/yarn

  The 1.x line is frozen - features and bugfixes now happen on https://github.com/yarnpkg/berry

  Language:JavaScript41.5k5556.6k2.7k

• vega/vega

  A visualization grammar.

  Language:JavaScript11.3k2891.9k1.5k

• biolab/orange3

  🍊 :bar_chart: :bulb: Orange: Interactive data analysis

  Language:Python5k1902.4k1k

• petgraph/petgraph

  Graph data structure library for Rust.

  Language:Rust3.1k35324356

• desireevl/awesome-quantum-computing

  A curated list of awesome quantum computing learning and developing resources.

  2.7k1374410

• argenos/zotero-mdnotes

  A Zotero plugin to export item metadata and notes as markdown files

  Language:JavaScript1.4k1814282

• tanghaibao/goatools

  Python library to handle Gene Ontology (GO) terms

  Language:Python79823214209

• zqfang/GSEApy

  Gene Set Enrichment Analysis in Python

  Language:Python58812209121

• vega/ipyvega

  IPython/Jupyter notebook module for Vega and Vega-Lite

  Language:Jupyter Notebook3752810265

• theislab/scarches

  Reference mapping for single-cell genomics

  Language:Jupyter Notebook3471217352

• bedops/bedops

  :microscope: BEDOPS: high-performance genomic feature operations

  Language:C3071627360

• bionumpy/bionumpy

  Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/

  Language:Python28142816

• iqtree/iqtree2

  NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

  Language:C++2611524759

• weberlab-hhu/Helixer

  Using Deep Learning to predict gene annotations

  Language:Python1761413330

• hillerlab/TOGA

  TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

  Language:Python165916922

• conchoecia/odp

  oxford dot plots

  Language:Python14168110

• JinmiaoChenLab/GraphST

  Language:Python9934014

• Teichlab/cellhint

  A tool for semi-automatic cell type harmonization and integration

  Language:Python994911

• vandijklab/cell2sentence-ft

  Cell2Sentence turns scRNA-seq data into text for LLM training.

  Language:Python845814

• prabhakarlab/Banksy

  BANKSY: spatial clustering

  Language:R8243612

• KlugerLab/GeneTrajectory

  R implementation of GeneTrajectory

  Language:R5171610

• wanglab-broad/ClusterMap

  ClusterMap for multi-scale clustering analysis of spatial gene expression

  Language:Jupyter Notebook4311211

• prabhakarlab/Banksy_py

  Language:Jupyter Notebook363144

• ridgelab/JustOrthologs

  Language:Python3541816

• vandijklab/cell2sentence

  Cell2Sentence: Teaching Large Language Models the Language of Biology

  Language:Jupyter Notebook35246

• KlugerLab/GeneTrajectory-python

  Python implementation of Gene Trajectory

  Language:Jupyter Notebook24572

• ratschlab/aestetik

  AESTETIK: AutoEncoder for Spatial Transcriptomics Expression with Topology and Image Knowledge

  Language:Python11400

• katherine-benjamin/topact-paper

  Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"

  Language:Jupyter Notebook10141

• florisvdf/ai-environmental-impact

  Mini workshop to provide a peak of what’s happening under the hood of models currently at the frontier of the AI revolution, and about how we can track the emissions of our own code.

  6100

• wenkaiyan-kevin/PlantBind

  A tool for predicting transcription factor binding sites in plants

  Language:Python4113